View source: R/createChromosomalMatrixSet.R

createChromosomalMatrixSet | R Documentation |

Takes a linear regression matrix and sets infinites to a finite value, and changes the sign to match the sign of the correlation for each value.

createChromosomalMatrixSet( whole_genome_mat, output_dir = NULL, prefix = "nbl_" )

`whole_genome_mat` |
The matrix containing all of the data, from which the individual matrices will be split. |

`output_dir` |
the folder where the matrices in RData format, will be written. |

`prefix` |
filename prefix for individual matrices. Default: "nbl_" |

The list of files already written to disk, with full filenames and paths.

#examples for this function would be too large to #include and should be run on an HPC machine node. #illustration of this process is shown clearly in #the vignette and can be done if a user properly #follows the instructions. # The function is intended to be run on a whole interactome matrix (chr1-X).

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