API for Capsule
Comprehensive Reproducibility Framework for R and Bioinformatics Analysis
| Global functions | |
|---|---|
| .build_dependency_graph | Man page Source code |
| .calculate_checksum | Man page Source code |
| .compare_packages | Man page Source code |
| .compare_registries | Man page Source code |
| .create_config | Man page Source code |
| .create_example_script | Man page Source code |
| .create_gitignore | Man page Source code |
| .extract_package_info | Man page Source code |
| .format_r_value | Man page Source code |
| .format_size | Man page Source code |
| .generate_comparison_report | Man page Source code |
| .generate_docker_compose | Man page Source code |
| .generate_docker_readme | Man page Source code |
| .generate_dockerfile | Man page Source code |
| .generate_dockerignore | Man page Source code |
| .get_fasta_stats | Man page Source code |
| .get_tool_path | Man page Source code |
| .get_tool_version | Man page Source code |
| .load_conda_registry | Man page Source code |
| .load_param_registry | Man page Source code |
| .load_reference_registry | Man page Source code |
| .load_registry | Man page Source code |
| .load_seed_registry | Man page Source code |
| .load_tools_registry | Man page Source code |
| .parse_deps | Man page Source code |
| .save_conda_registry | Man page Source code |
| .save_param_registry | Man page Source code |
| .save_reference_registry | Man page Source code |
| .save_registry | Man page Source code |
| .save_seed_registry | Man page Source code |
| .save_tools_registry | Man page Source code |
| capture_environment | Man page Source code |
| capture_hardware | Man page Source code |
| capture_session | Man page Source code |
| capture_system_libraries | Man page Source code |
| compare_snapshots | Man page Source code |
| create_renv_lockfile | Man page Source code |
| create_repro_report | Man page Source code |
| export_for_cwl | Man page Source code |
| export_for_nextflow | Man page Source code |
| export_for_snakemake | Man page Source code |
| export_for_wdl | Man page Source code |
| generate_docker | Man page Source code |
| generate_repro_script | Man page Source code |
| generate_singularity | Man page Source code |
| get_conda_env_info | Man page Source code |
| get_data_lineage | Man page Source code |
| get_param_history | Man page Source code |
| get_reference_info | Man page Source code |
| get_seed_history | Man page Source code |
| get_tool_versions | Man page Source code |
| init_capsule | Man page Source code |
| list_reference_sources | Man page Source code |
| list_snapshots | Man page Source code |
| restore_conda_env | Man page Source code |
| restore_seed | Man page Source code |
| set_seed | Man page Source code |
| snapshot_packages | Man page Source code |
| snapshot_workflow | Man page Source code |
| track_conda_env | Man page Source code |
| track_data | Man page Source code |
| track_external_tools | Man page Source code |
| track_params | Man page Source code |
| track_reference_genome | Man page Source code |
| verify_data | Man page Source code |
