generate_repro_script: Generate Reproducible Script

In Capsule: Comprehensive Reproducibility Framework for R and Bioinformatics Analysis

Generate Reproducible Script

Description

Generate an executable R script that includes all reproducibility information including package versions, seeds, parameters, and data verification.

Usage

generate_repro_script(
  script_file,
  source_script = NULL,
  analysis_name = "analysis",
  include_renv = TRUE,
  include_data_check = TRUE,
  include_session_info = TRUE
)

Arguments

script_file	Character. Path to save the generated script
source_script	Character. Original analysis script to include
analysis_name	Character. Name for this analysis
include_renv	Logical. Include renv initialization. Default TRUE.
include_data_check	Logical. Include data verification. Default TRUE.
include_session_info	Logical. Include session info at end. Default TRUE.

Value

Path to generated script

Examples

## Not run: 
generate_repro_script(
  "analysis_reproducible.R",
  source_script = "analysis.R",
  analysis_name = "main_analysis"
)

## End(Not run)

Capsule documentation built on Nov. 11, 2025, 5:14 p.m.