export_for_nextflow: Export Capsule Data for Nextflow

In Capsule: Comprehensive Reproducibility Framework for R and Bioinformatics Analysis

Export Capsule Data for Nextflow

Description

Export all Capsule tracking data in a format suitable for Nextflow pipelines

Usage

export_for_nextflow(output_file, include_checksums = TRUE)

Arguments

output_file	Character. Path to save manifest (required).
include_checksums	Logical. Include file checksums. Default TRUE.

Value

List containing manifest data

Examples

## Not run: 
export_for_nextflow(tempfile(fileext = ".json"))

## End(Not run)

Capsule documentation built on Nov. 11, 2025, 5:14 p.m.