generate_docker: Generate Docker Configuration

In Capsule: Comprehensive Reproducibility Framework for R and Bioinformatics Analysis

Generate Docker Configuration

Description

Generate a Dockerfile and docker-compose.yml for complete environment reproducibility

Usage

generate_docker(
  output_dir,
  r_version = NULL,
  base_image = "rocker/r-ver",
  system_deps = NULL,
  project_name = "reproflow-project",
  include_rstudio = FALSE
)

Arguments

output_dir	Character. Directory to save Docker files (required).
r_version	Character. R version to use. Default is current R version.
base_image	Character. Base Docker image. Default "rocker/r-ver"
system_deps	Character vector. System dependencies to install
project_name	Character. Name for the project
include_rstudio	Logical. Include RStudio Server. Default FALSE.

Value

List of generated file paths

Examples

## Not run: 
generate_docker(
  output_dir = tempdir(),
  project_name = "my_analysis",
  system_deps = c("libcurl4-openssl-dev", "libxml2-dev")
)

## End(Not run)

Capsule documentation built on Nov. 11, 2025, 5:14 p.m.