deconvolution_epidish: EpiDISH deconvolution

In CimpleG: A Method to Identify Single CpG Sites for Classification and Deconvolution

EpiDISH deconvolution

Description

EpiDISH deconvolution

Usage

deconvolution_epidish(
  ref_mat,
  new_data,
  epidish_method = "CBS",
  epidish_nuv = seq(0.1, 1, 0.1),
  epidish_maxit = 10000
)

Arguments

ref_mat	Reference matrix.
new_data	New data matrix.
epidish_method	One of 'CBS' (Cibersort), 'RPC' (Robust Partial Correlations), 'CP' (Constrained Projection). Default is 'CBS'. See 'EpiDISH' documentation for more information.
epidish_nuv	A vector of candidate values used for svm. Only used when epidish_method is set to 'CBS'. See 'EpiDISH' documentation for more information.
epidish_maxit	Integer with the number of max iterations for IWLS (Iterative Weighted Least Squares). Only used when epidish_method is set to 'RPC'.

CimpleG documentation built on Dec. 7, 2025, 1:07 a.m.