get_cpg_annotation: Get CpG annotation from Illumina

In CimpleG: A Method to Identify Single CpG Sites for Classification and Deconvolution

Get CpG annotation from Illumina

Description

Get CpG annotation from Illumina

Usage

get_cpg_annotation(
  cpg_id,
  is_epic = TRUE,
  short_annotation = TRUE,
  silence_warnings = TRUE
)

Arguments

cpg_id	A character vector with the CpG IDs from Illumina to annotate.
is_epic	A boolean, if TRUE, the annotation will be fetched from the EPIC array, otherwise from the 450k array. Default is TRUE.
short_annotation	A boolean, if TRUE, only a small number of columns from the full annotation reference will be kept. This leads to an easier to read output. Default is TRUE.
silence_warnings	A boolean, if TRUE, warnings produced during the downloading and loading of the data will be silenced. Default is TRUE.

Value

A table with the annotated CpGs in the same order as the provided signatures.

Examples

library("CimpleG")

# read data
signatures <- c("cg14501977", "cg24548498")

# Get signature annotation
signature_annotation <- get_cpg_annotation(signatures)

# check signature annotation
signature_annotation

CimpleG documentation built on Dec. 7, 2025, 1:07 a.m.