test_targets: Cell line test data targets

In CimpleG: A Method to Identify Single CpG Sites for Classification and Deconvolution

Cell line test data targets

Description

Cell line test data targets

Usage

test_targets

Format

A data frame with 18 variables for 170 samples as rows.

gsm

GSM identifier (GEO accession number) of the sample

cell_type

the cell type of the respective sample

adipocytes

one-hot encoded (1 or 0) column defining if a given sample is an adipocyte

astrocytes

one-hot encoded (1 or 0) column defining if a given sample is an astrocyte

blood_cells

one-hot encoded (1 or 0) column defining if a given sample is a blood cell

endothelial_cells

one-hot encoded (1 or 0) column defining if a given sample is an endothelial cell

epidermal_cells

one-hot encoded (1 or 0) column defining if a given sample is an epidermal cell

epithelial_cells

one-hot encoded (1 or 0) column defining if a given sample is an epithelial cell

fibroblasts

one-hot encoded (1 or 0) column defining if a given sample is a fibroblast

glia

one-hot encoded (1 or 0) column defining if a given sample is a glia cell

hepatocytes

one-hot encoded (1 or 0) column defining if a given sample is an hepatocyte

ips_cells

one-hot encoded (1 or 0) column defining if a given sample is an ipsc

msc

one-hot encoded (1 or 0) column defining if a given sample is an msc

muscle_cells

one-hot encoded (1 or 0) column defining if a given sample is a muscle cell

neurons

one-hot encoded (1 or 0) column defining if a given sample is a neuron

muscle_sc

one-hot encoded (1 or 0) column defining if a given sample is a muscle stem cell

group_data

to which dataset these data belong to (train or test)

description

the cell type of the respective sample, in long form

CimpleG documentation built on Dec. 7, 2025, 1:07 a.m.