DNAStringSetOPR | R Documentation |
Curates biological sequences of primer reverse.This cleaning is required for techniques such as cDNA-AFLP.
DNAStringSetOPR(SEQs, PrimerR)
SEQs |
file with fasta format containing biological sequences that are to be cleaned. |
PrimerR |
dnastring containing the reverse primer/vector sequences to be removed. |
clean biological sequences and visualization of the alignments
Florencia I Pozzi, Silvina A. Felitti
SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences")) PrimerR= DNAString ("GACTGCGTACCATGC") DNAStringSetOPR (SEQs,PrimerR)
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