DNAStringSetTPR | R Documentation |
Curates biological sequences of two restriction enzyme primers or cloning vectors.This cleaning is required for techniques such as cDNA-AFLP.This cleaning is required for techniques such as cDNA-AFLP.
DNAStringSetTPR(SEQs, PrimerF, PrimerR)
SEQs |
file with fasta format containing biological sequences that are to be cleaned. |
PrimerF |
dnastring containing the foward primer/vector sequences to be removed. |
PrimerR |
dnastring containing the reverse primer/vector sequences to be removed. |
clean biological sequences and visualization of the alignments
Florencia I Pozzi, Silvina A. Felitti
SEQs = readDNAStringSet(system.file("sequences","SeqInputTPR.fasta", package = "CleanBSequences")) PrimerR= DNAString ("GACTGCGTACCATGC") PrimerF = DNAString("GATGAGTCCTGACCGAA") DNAStringSetTPR (SEQs,PrimerF,PrimerR)
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