OnePrimerRemove: Clean biological secuences
In CleanBSequences: Curing of Biological Sequences

OnePrimerRemove

R Documentation

Clean biological secuences

Description

Curates biological sequences of primer reverse.This cleaning is required for techniques such as cDNA-AFLP.

Usage

OnePrimerRemove(SEQs, PrimerR)

Arguments

`SEQs`	dnastring or file with fasta format containing biological sequences that are to be cleaned.
`PrimerR`	dnastring or file with fasta format containing the reverse primer/vector sequences to be removed.

Value

clean biological sequences and visualization of the alignments

Author(s)

Florencia I Pozzi and Silvina A. Felitti

Examples

SEQs = DNAString(paste("GCCTCGCCTCCCTCTTTGATCAGCTTCGCATATCAGGCAACAGCTCAATTT",
"GGTACTTGTTCAAATAAGCATTTAGACCATCTGTTCCAAGAACCTTTGCAATCTT",
"CACAAGGTGGTCATGGTACGCAGTC", sep=""))
PrimerR= DNAString("GACTGCGTACCATGC")
OnePrimerRemove (SEQs,PrimerR)

CleanBSequences documentation built on April 28, 2022, 1:07 a.m.