associatedRelationshipIds: Get available relationships with concepts in a codelist

In CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use

Get available relationships with concepts in a codelist

Description

Get available relationships with concepts in a codelist

Usage

associatedRelationshipIds(
  x,
  cdm,
  standardConcept1 = "Standard",
  standardConcept2 = "Standard",
  domains1 = "Condition",
  domains2 = "Condition"
)

Arguments

x	A codelist.
cdm	A cdm reference to an OMOP CDM dataset. If data is held within a database, the vocabulary tables should be in the same schema as the clinical tables (person, observation period, and so on).
standardConcept1	Character vector with one or more of "Standard", "Classification", and "Non-standard". These correspond to the flags used for the standard_concept field in the concept table of the cdm.
standardConcept2	Character vector with one or more of "Standard", "Classification", and "Non-standard". These correspond to the flags used for the standard_concept field in the concept table of the cdm.
domains1	Character vector with one or more of the OMOP CDM domain. If NULL, all domains are considered.
domains2	Character vector with one or more of the OMOP CDM domain. If NULL, all domains are considered.

Value

A character vector with unique concept relationship values.

Examples

library(CodelistGenerator)
library(omock)

# Create CDM object
cdm <- mockCdmReference()


codelist <- newCodelist(list("codes1" = c(8479L, 4117795L),
                             "codes2" = c(8480L, 8600L, 8481L, 4189167L)))
associatedRelationshipIds(x = codelist, cdm = cdm,
                         standardConcept1 = c("Standard", "Non-standard", "Classification"),
                         standardConcept2 = c("Standard", "Non-standard", "Classification"),
                         domains1 = NULL,
                         domains2 = NULL)

CodelistGenerator documentation built on Dec. 17, 2025, 5:06 p.m.