getMappings: Show mappings from non-standard vocabularies to standard
In CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use

getMappings

R Documentation

Show mappings from non-standard vocabularies to standard

Description

Show mappings from non-standard vocabularies to standard

Usage

getMappings(
  candidateCodelist,
  cdm = NULL,
  nonStandardVocabularies = c("ATC", "ICD10CM", "ICD10PCS", "ICD9CM", "ICD9Proc",
    "LOINC", "OPCS4", "Read", "RxNorm", "RxNorm Extension", "SNOMED")
)

Arguments

`candidateCodelist`	Dataframe
`cdm`	cdm_reference via CDMConnector::cdm_from_con()
`nonStandardVocabularies`	Character vector

Value

tibble

Examples


cdm <- CodelistGenerator::mockVocabRef()
codes <- CodelistGenerator::getCandidateCodes(
  cdm = cdm,
  keywords = "osteoarthritis"
)
CodelistGenerator::getMappings(
  cdm = cdm,
  candidateCodelist = codes,
  nonStandardVocabularies = "READ"
)

CodelistGenerator documentation built on Oct. 17, 2024, 5:09 p.m.