codesFromCohort: Get concept ids from JSON files containing cohort definitions
In CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use

codesFromCohort

R Documentation

Get concept ids from JSON files containing cohort definitions

Description

Get concept ids from JSON files containing cohort definitions

Usage

codesFromCohort(path, cdm, type = c("codelist"))

Arguments

`path`	Path to a file or folder containing JSONs of cohort definitions.
`cdm`	A cdm reference via CDMConnector.
`type`	Can be "codelist", "codelist_with_details" or "concept_set_expression".

Value

Named list with concept_ids for each concept set.

Examples


cdm <- mockVocabRef("database")
x <- codesFromCohort(cdm = cdm,
                     path =  system.file(package = "CodelistGenerator",
                     "cohorts_for_mock"))
x
CDMConnector::cdmDisconnect(cdm)

CodelistGenerator documentation built on April 11, 2025, 5:51 p.m.