summariseUnmappedCodes: Find unmapped concepts related to codelist

In CodelistGenerator: Identify Relevant Clinical Codes and Evaluate Their Use

Find unmapped concepts related to codelist

Description

Find unmapped concepts related to codelist

Usage

summariseUnmappedCodes(
  x,
  cdm,
  table = c("condition_occurrence", "device_exposure", "drug_exposure", "measurement",
    "observation", "procedure_occurrence")
)

Arguments

x	A codelist.
cdm	A cdm reference via CDMConnector.
table	Names of clinical tables in which to search for unmapped codes. Can be one or more of "condition_occurrence", "device_exposure", "drug_exposure", "measurement", "observation", and "procedure_occurrence".

Value

A summarised result of unmapped concepts related to given codelist.

Examples

cdm <- mockVocabRef("database")
codes <- list("Musculoskeletal disorder" = 1)
cdm <- omopgenerics::insertTable(cdm, "condition_occurrence",
dplyr::tibble(person_id = 1,
              condition_occurrence_id = 1,
              condition_concept_id = 0,
              condition_start_date  = as.Date("2000-01-01"),
              condition_type_concept_id  = NA,
              condition_source_concept_id = 7))
summariseUnmappedCodes(x = list("osteoarthritis" = 2), cdm = cdm,
table = "condition_occurrence")

CDMConnector::cdmDisconnect(cdm)

CodelistGenerator documentation built on April 11, 2025, 5:51 p.m.