View source: R/summariseUnmappedCodes.R
summariseUnmappedCodes | R Documentation |
Find unmapped concepts related to codelist
summariseUnmappedCodes(
x,
cdm,
table = c("condition_occurrence", "device_exposure", "drug_exposure", "measurement",
"observation", "procedure_occurrence")
)
x |
A codelist. |
cdm |
A cdm reference via CDMConnector. |
table |
Names of clinical tables in which to search for unmapped codes. Can be one or more of "condition_occurrence", "device_exposure", "drug_exposure", "measurement", "observation", and "procedure_occurrence". |
A summarised result of unmapped concepts related to given codelist.
cdm <- mockVocabRef("database")
codes <- list("Musculoskeletal disorder" = 1)
cdm <- omopgenerics::insertTable(cdm, "condition_occurrence",
dplyr::tibble(person_id = 1,
condition_occurrence_id = 1,
condition_concept_id = 0,
condition_start_date = as.Date("2000-01-01"),
condition_type_concept_id = NA,
condition_source_concept_id = 7))
summariseUnmappedCodes(x = list("osteoarthritis" = 2), cdm = cdm,
table = "condition_occurrence")
CDMConnector::cdmDisconnect(cdm)
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