| %||% |
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| .FilePath |
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| .PlGwasC |
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| .PlInfoC |
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| .RbedInfoC |
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| .ReadInfo |
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| CollapsABEL |
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| CollapsABEL-package |
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| FilePath-class |
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| PlGwasC-class |
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| PlInfoC-class |
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| RbedInfoC-class |
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| ReadInfo-class |
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| alphaNumeric |
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| asBigMatrix |
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| asBigMatrix,data.frame,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-metho |
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| asBigMatrix,matrix,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method |
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| asBigMatrix,vector,ANY,ANY,ANY,ANY,ANY,ANY,ANY,logical-method |
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| assocFilter |
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| baseName |
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| baseName,FilePath-method |
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| bedSizeCorrect |
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| bedcollr |
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| bimCorrectTypes |
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| bin2DescFilename |
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| binPhe |
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| bmAddCol |
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| bmAttachBin |
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| bmConvertFun |
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| bmFilename |
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| bmFilepath |
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| bytesSnp |
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| chExt |
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| changeByMap |
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| charify |
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| checkFileExist |
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| cmh |
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| colClasses |
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| colCors |
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| collClear |
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| collapsabel |
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| collapsabel-package |
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| collapse |
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| collapseMat |
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| collenv |
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| connectSnpPair |
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| contrastData |
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| contrastPlot |
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| correctDesc |
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| correctTypes |
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| correctTypes_methods |
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| covarNames |
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| cytoband |
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| datToVec |
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| desc2BinFilename |
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| dir.create2 |
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| dirName |
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| dirName,FilePath-method |
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| eprint |
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| evalFile |
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| famCorrectTypes |
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| fidIid |
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| file.create2 |
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| filePath |
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| fileSize |
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| gcdhBmCreate |
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| gcdhDir |
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| gcdhPower |
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| gcdhRegion |
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| gcdhReport |
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| getHaplo |
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| getHaplos |
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| getOrElse-operator |
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| getQuery |
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| getr2 |
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| glm2 |
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| glmIter |
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| gwasDat |
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| gwasDir |
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| gwasLog |
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| gwasOut |
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| gwasOutStem |
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| gwasR |
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| gwasRDS |
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| head2 |
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| headPhe |
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| isBinary |
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| isS4Class |
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| isSQLite3 |
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| isSetup |
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| isSetupRbed |
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| lagDistance |
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| lenCheck |
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| listEqual |
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| listGwasTags |
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| listTags |
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| loadGwas |
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| makePhe |
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| manhattanData |
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| manhattanPlot |
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| nIndivApprPl |
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| nIndivPl |
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| nSnpPl |
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| nonExistentFiles |
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| numVectorSQLRepr |
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| permutePhe |
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| plGwas |
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| plGwas,PlGwasC,character,character,character,character,logical,l |
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| plGwas,RbedInfoC,character,character,character,character,logical |
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| plGwas,RbedInfoC,character,character,character,character,missing |
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| plGwas,RbedInfoC,character,character,missing,character,missing,m |
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| plInfo |
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| plInfo,PlInfoC,character,logical-method |
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| plInfo,PlInfoC,character,missing-method |
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| plInfo,missing,character,logical-method |
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| plInfo,missing,character,missing-method |
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| plTrim |
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| plinkr |
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| qq |
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| qq2 |
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| qqmulti |
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| randNormDat |
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| randomString |
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| randomStrings |
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| rbedInfo |
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| read.phe.table |
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| readAssoc |
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| readBed |
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| readBed,RbedInfoC,ANY,logical,logical-method |
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| readBed,RbedInfoC,ANY,logical,missing-method |
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| readBed,RbedInfoC,ANY,missing,logical-method |
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| readBed,RbedInfoC,ANY,missing,missing-method |
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| readBed,RbedInfoC,missing,logical,logical-method |
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| readBed,RbedInfoC,missing,logical,missing-method |
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| readBed,RbedInfoC,missing,missing,logical-method |
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| readBed,RbedInfoC,missing,missing,missing-method |
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| readBim |
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| readBmBin |
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| readDesc |
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| readFam |
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| readFunFactory |
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| readGwasOut |
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| readInfo |
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| readInfo,character,character-method |
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| readInfo,character,missing-method |
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| readLiteral |
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| readLogistic |
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| readPhe |
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| readPlinkOut |
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| readQassoc |
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| realBedSize |
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| removeTag |
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| reprClasses |
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| rmFilesByStem |
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| runGcdh |
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| runGwas |
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| runTypeI |
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| saveDesc |
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| sendQuery |
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| setOptModel |
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| setup |
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| setupRbed |
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| shiftBed |
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| shiftedStem |
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| slurp |
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| snpPos |
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| snpRowId |
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| spit |
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| sqliteFilePl |
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| stopFormat |
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| strConcat |
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| strVectorRepr |
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| strVectorSQLRepr |
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| systemFormat |
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| tail2 |
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| theoBedSize |
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| validPhe |
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| write.phe.table |
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