Description Usage Arguments Value Examples
View source: R/AssayMutRatio.R
This function is to use the well established assays information to detect mutations in different SARS-CoV-2 genomic sites. The output will be series of figures presenting the mutation profile using a specific assay and a figure for comparison between the mutation detection rate in each primers binding region.
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nucmerr |
Mutation information containing group list(derived from "nucmer" object using "nucmerRMD" function). |
assays |
Assays dataframe including the detection ranges of mutations. |
totalsample |
Total sample number, total cleared GISAID fasta data. |
plotType |
Figure type for either "barplot" or "logtrans". |
outdir |
The output directory. |
Plot the selected figure type as output.
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