plotMutAnno: Plot the mutation statistics after annotating the "nucmer"...
In CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)
Description
Usage
Arguments
Value
Examples
Description
Basic descriptions for the mutational events.
Usage
1
plotMutAnno(covid_annot = covid_annot, figureType = "MostMut", outdir = NULL)
Arguments
covid_annot
The mutation effects provided by "indelSNP" function.
figureType
Figure type for: "MostMut", "MutPerSample", "VarClasses", "VarType", "NucleoEvents", "ProEvents".
outdir
The output directory.
Value
Plot the selected figure type as output.
Examples
1
2
3
4
5
data("covid_annot")
# make sure the covid_annot is a dataframe
covid_annot <- as.data.frame(covid_annot)
#outdir <- tempdir() specify your output directory
plotMutAnno(covid_annot = covid_annot, figureType = "MostMut", outdir = NULL)
CovidMutations documentation built on Sept. 18, 2020, 5:06 p.m.
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Description Usage Arguments Value Examples
Description
Basic descriptions for the mutational events.
Usage
1 | plotMutAnno(covid_annot = covid_annot, figureType = "MostMut", outdir = NULL)
|
Arguments
covid_annot |
The mutation effects provided by "indelSNP" function. |
figureType |
Figure type for: "MostMut", "MutPerSample", "VarClasses", "VarType", "NucleoEvents", "ProEvents". |
outdir |
The output directory. |
Value
Plot the selected figure type as output.
Examples
1 2 3 4 5 | data("covid_annot")
# make sure the covid_annot is a dataframe
covid_annot <- as.data.frame(covid_annot)
#outdir <- tempdir() specify your output directory
plotMutAnno(covid_annot = covid_annot, figureType = "MostMut", outdir = NULL)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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