The "nucmer.snps" variant file is obtained by processing the SARS-Cov-2 sequence from Gisaid website (complete, high coverage only, low coverage exclusion, Host=human, Virus name = hCoV-19) with "seqkit" software and "nucmer" scripts. The example data is downsampled from complete data in 2020-07-28 (0.001 proportion, 52 samples).
A dataframe with 437 rows (mutation sites) and 14 columns.
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