nucmer: Mutation information derived from "nucmer" SNP analysis
In CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)
Description
Usage
Format
Source
Examples
Description
The "nucmer.snps" variant file is obtained by processing the SARS-Cov-2 sequence
from Gisaid website (complete, high coverage only, low coverage exclusion, Host=human,
Virus name = hCoV-19) with "seqkit" software and "nucmer" scripts. The example data
is downsampled from complete data in 2020-07-28 (0.001 proportion, 52 samples).
Usage
1
Format
A dataframe with 437 rows (mutation sites) and 14 columns.
Source
Examples
1
CovidMutations documentation built on Sept. 18, 2020, 5:06 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source Examples
Description
The "nucmer.snps" variant file is obtained by processing the SARS-Cov-2 sequence from Gisaid website (complete, high coverage only, low coverage exclusion, Host=human, Virus name = hCoV-19) with "seqkit" software and "nucmer" scripts. The example data is downsampled from complete data in 2020-07-28 (0.001 proportion, 52 samples).
Usage
1 |
Format
A dataframe with 437 rows (mutation sites) and 14 columns.
Source
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.