refseq: SARS-Cov-2 genomic reference sequence from NCBI

Description Usage Format Source Examples

Description

This reference sequence is derived from "fasta" file, preprocessed by "read.fasta" function(refseq<-read.fasta("NC_045512.2.fa",forceDNAtolower=FALSE)[[1]]). It is used for annotating mutations in virus samples.

Usage

1

Format

"SeqFastadna" characters.

Source

https://pubmed.ncbi.nlm.nih.gov/32015508/

Examples

1

CovidMutations documentation built on Sept. 18, 2020, 5:06 p.m.