Man pages for Cyclops
Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
| aconfint | Asymptotic confidence intervals for a fitted Cyclops model... |
| appendSqlCyclopsData | appendSqlCyclopsData |
| coef.cyclopsFit | Extract model coefficients |
| confint.cyclopsFit | Confidence intervals for Cyclops model parameters |
| convertToCyclopsData | Convert data from two data frames or ffdf objects into a... |
| convertToCyclopsVariance | Convert to Cyclops Prior Variance |
| convertToGlmnetLambda | Convert to glmnet regularization parameter |
| convertToTimeVaryingCoef | Convert short sparse covariate table to long sparse covariate... |
| coverage | Coverage |
| createAutoGridCrossValidationControl | Create a Cyclops control object that supports multiple... |
| createControl | Create a Cyclops control object |
| createCyclopsData | Create a Cyclops data object |
| createNonSeparablePrior | Create a Cyclops prior object that returns the MLE of... |
| createParameterizedPrior | Create a Cyclops parameterized prior object |
| createPrior | Create a Cyclops prior object |
| createWeightBasedSearchControl | Create a Cyclops control object that supports in- /... |
| cyclops | Cyclops: Cyclic coordinate descent for logistic, Poisson and... |
| Cyclops-package | Cyclops: Cyclic Coordinate Descent for Logistic, Poisson and... |
| finalizeSqlCyclopsData | finalizeSqlCyclopsData |
| fitCyclopsModel | Fit a Cyclops model |
| fitCyclopsSimulation | Fit simulated data |
| getCovariateIds | Get covariate identifiers |
| getCovariateTypes | Get covariate types |
| getCrossValidationInfo | Get cross-validation information from a Cyclops model fit |
| getCyclopsPredictiveLogLikelihood | Compute predictive log-likelihood from a Cyclops model fit |
| getCyclopsProfileLogLikelihood | Profile likelihood for Cyclops model parameters |
| getFineGrayWeights | Creates a 'Surv' object that forces in competing risks and... |
| getFloatingPointSize | Get floating point size |
| getHyperParameter | Get hyperparameter |
| getNumberOfCovariates | Get total number of covariates |
| getNumberOfRows | Get total number of rows |
| getNumberOfStrata | Get number of strata |
| getNumberOfTypes | Get total number of outcome types |
| getSEs | Extract standard errors |
| getUnivariableCorrelation | Get univariable correlation |
| getUnivariableSeparability | Get univariable linear separability |
| isInitialized | Check if a Cyclops data object is initialized |
| listGPUDevices | List available GPU devices |
| logLik.cyclopsFit | Extract log-likelihood |
| meanLinearPredictor | Calculates xbar*beta |
| mse | Mean squared error |
| Multitype | Create a multitype outcome object |
| oxford | Oxford self-controlled case series data |
| plotCyclopsSimulationFit | Plot Cyclops simulation model fit |
| predict.cyclopsFit | Model predictions |
| print.cyclopsData | Print a Cyclops data object |
| print.cyclopsFit | Print a Cyclops model fit object |
| printMatrixMarket | Print Cyclops data matrix to file |
| readCyclopsData | Read Cyclops data from file |
| reduce | Apply simple data reductions |
| runBootstrap | Run Bootstrap for Cyclops model parameter |
| setOpenCLDevice | Set GPU device |
| simulateCyclopsData | Simulation Cyclops dataset |
| splitTime | Split the analysis time into several intervals for... |
| summary.cyclopsData | Cyclops data object summary |
| survfit.cyclopsFit | Calculate baseline hazard function |
| vcov.cyclopsFit | Calculate variance-covariance matrix for a fitted Cyclops... |
