Files in Cyclops
Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/PackageMaintenance.R R/cyclops.R R/DataManagement.R R/GetFrineGrayWeights.R R/Survfit.R R/CrossValidationControl.R R/NewDataConversion.R R/Multitype.R R/SpecialPriors.R R/ParameterizedPrior.R R/ExampleData.R R/Predict.R R/ModelFit.R R/Simulation.R
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/RcppCyclopsInterface.cpp
src/RcppIsSorted.cpp
src/IsSorted.cpp
src/RcppProgressLogger.h
src/RcppModelData.h
src/RcppModelData.cpp
src/IsSorted.h
src/RcppCyclopsInterface.h
src/RcppOutputHelper.h
src/hide/iterator_adaptors.hpp
src/hide/iterator.hpp
src/hide/iterator/zip_iterator.hpp
src/hide/iterator/is_lvalue_iterator.hpp
src/hide/iterator/reverse_iterator.hpp
src/hide/iterator/filter_iterator.hpp
src/hide/iterator/iterator_categories.hpp
src/hide/iterator/iterator_archetypes.hpp
src/hide/iterator/iterator_concepts.hpp
src/hide/iterator/transform_iterator.hpp
src/hide/iterator/minimum_category.hpp
src/hide/iterator/iterator_traits.hpp
src/hide/iterator/indirect_iterator.hpp
src/hide/iterator/is_readable_iterator.hpp
src/hide/iterator/interoperable.hpp
src/hide/iterator/iterator_adaptor.hpp
src/hide/iterator/function_input_iterator.hpp
src/hide/iterator/iterator_facade.hpp
src/hide/iterator/new_iterator_tests.hpp
src/hide/iterator/counting_iterator.hpp
src/hide/iterator/permutation_iterator.hpp
src/hide/iterator/detail/config_undef.hpp
src/hide/iterator/detail/config_def.hpp
src/hide/iterator/detail/minimum_category.hpp
src/hide/iterator/detail/any_conversion_eater.hpp
src/hide/iterator/detail/facade_iterator_category.hpp
src/hide/iterator/detail/enable_if.hpp
src/tinythread/tinythread.h
src/tinythread/fast_mutex.h
src/tinythread/tinythread.cpp
src/utils/HParSearch.cpp
src/utils/RZeroIn.h
src/utils/HParSearch.h
src/cyclops/CcdInterface.h
src/cyclops/Types.h
src/cyclops/CompressedDataMatrix.h
src/cyclops/ModelData.cpp
src/cyclops/CompressedDataMatrix.cpp
src/cyclops/Thread.h
src/cyclops/Timer.h
src/cyclops/CcdInterface.cpp
src/cyclops/Timer.cpp
src/cyclops/Timing.h
src/cyclops/CyclicCoordinateDescent.h
src/cyclops/Iterators.h
src/cyclops/ModelData.h
src/cyclops/CyclicCoordinateDescent.cpp
src/cyclops/priors/JointPrior.h
src/cyclops/priors/CovariatePrior.cpp
src/cyclops/priors/NewCovariatePrior.h
src/cyclops/priors/CovariatePrior.h
src/cyclops/priors/PriorFunction.h
src/cyclops/io/NewGenericInputReader.h
src/cyclops/io/OutputWriter.h
src/cyclops/io/InputReader.h
src/cyclops/io/InputReader.cpp
src/cyclops/io/BaseInputReader.h
src/cyclops/io/ProgressLogger.h
src/cyclops/io/SparseIndexer.h
src/cyclops/drivers/AutoSearchCrossValidationDriver.h
src/cyclops/drivers/BootstrapDriver.h
src/cyclops/drivers/BootstrapSelector.h
src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.cpp
src/cyclops/drivers/CrossValidationSelector.h
src/cyclops/drivers/BootstrapSelector.cpp
src/cyclops/drivers/GridSearchCrossValidationDriver.h
src/cyclops/drivers/HierarchyGridSearchCrossValidationDriver.h
src/cyclops/drivers/GridSearchCrossValidationDriver.cpp
src/cyclops/drivers/ProportionSelector.h
src/cyclops/drivers/CrossValidationSelector.cpp
src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.cpp
src/cyclops/drivers/AbstractCrossValidationDriver.h
src/cyclops/drivers/AbstractSelector.cpp
src/cyclops/drivers/ProportionSelector.cpp
src/cyclops/drivers/BootstrapDriver.cpp
src/cyclops/drivers/AutoSearchCrossValidationDriver.cpp
src/cyclops/drivers/AbstractCrossValidationDriver.cpp
src/cyclops/drivers/AbstractSelector.h
src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.h
src/cyclops/drivers/AbstractDriver.cpp
src/cyclops/drivers/AbstractDriver.h
src/cyclops/engine/AbstractModelSpecifics.cpp
src/cyclops/engine/Ranges.h
src/cyclops/engine/ThreadPool.h
src/cyclops/engine/ModelSpecifics.h
src/cyclops/engine/AbstractModelSpecifics.h
src/cyclops/engine/ModelSpecifics.hpp
src/cyclops/engine/Recursions.hpp
src/cyclops/engine/ParallelLoops.h
inst/CITATION
inst/extdata/test1-clr.txt
inst/extdata/cpr_test.RData
inst/extdata/infert_ccd.txt
inst/extdata/CCD_LOGISTIC_TEST_17var.txt
tests/testthat.R tests/testthat/test-smallFineGray.R tests/testthat/test-believedBroken.R tests/testthat/test-normalization.R tests/testthat/test-smallBernoulli.R tests/testthat/test-smallCox.R tests/testthat/test-fastBarUpdate.R tests/testthat/test-smallMM.R tests/testthat/test-int64.R tests/testthat/test-profileLikelihood.R tests/testthat/test-predict.R tests/testthat/test-sqlConstructor.R tests/testthat/test-survfit.R tests/testthat/test-parameterizedPriors.R tests/testthat/test-cprViaSql.R tests/testthat/test-largeBernoulli.R tests/testthat/test-smallNormal.R tests/testthat/test-smallExactCLR.R tests/testthat/test-sorting.R tests/testthat/test-largeProfileLikelihood.R tests/testthat/test-xyConstructor.R tests/testthat/test-covariateRegularization.R tests/testthat/test-smallCLR.R tests/testthat/test-finiteMLE.R tests/testthat/test-offsetPoisson.R tests/testthat/test-dataConversionStratified.R tests/testthat/test-RcppDataModel.R tests/testthat/test-dataConversionUnstratified.R tests/testthat/test-simulation.R tests/testthat/test-cv.R tests/testthat/test-reductions.R tests/testthat/test-weighting.R tests/testthat/test-conditionalPoisson.R tests/testthat/test-floatingPoint.R tests/testthat/test-dataManagement.R tests/testthat/test-smallPoisson.R tests/testthat/test-correlation.R tests/testthat/test-weighted_cv.R tests/testthat/test-multitypePoisson.R
data/oxford.rda
man/createNonSeparablePrior.Rd man/isInitialized.Rd man/simulateCyclopsData.Rd man/finalizeSqlCyclopsData.Rd man/getNumberOfCovariates.Rd man/getCovariateIds.Rd man/fitCyclopsSimulation.Rd man/getHyperParameter.Rd man/Multitype.Rd man/vcov.cyclopsFit.Rd man/reduce.Rd man/convertToCyclopsData.Rd man/fitCyclopsModel.Rd man/getUnivariableSeparability.Rd man/createControl.Rd man/convertToCyclopsVariance.Rd man/getNumberOfStrata.Rd man/readCyclopsData.Rd man/printMatrixMarket.Rd man/coef.cyclopsFit.Rd man/getCyclopsPredictiveLogLikelihood.Rd man/print.cyclopsFit.Rd man/mse.Rd man/survfit.cyclopsFit.Rd man/confint.cyclopsFit.Rd man/getUnivariableCorrelation.Rd man/coverage.Rd man/summary.cyclopsData.Rd man/meanLinearPredictor.Rd man/getCyclopsProfileLogLikelihood.Rd man/getCrossValidationInfo.Rd man/getFloatingPointSize.Rd man/predict.cyclopsFit.Rd man/print.cyclopsData.Rd man/convertToGlmnetLambda.Rd man/cyclops.Rd man/oxford.Rd man/logLik.cyclopsFit.Rd man/createAutoGridCrossValidationControl.Rd man/createPrior.Rd man/createCyclopsData.Rd man/createParameterizedPrior.Rd man/getCovariateTypes.Rd man/getNumberOfTypes.Rd man/aconfint.Rd man/getFineGrayWeights.Rd man/appendSqlCyclopsData.Rd man/getSEs.Rd man/getNumberOfRows.Rd man/plotCyclopsSimulationFit.Rd
Cyclops documentation built on Aug. 10, 2022, 5:08 p.m.