finalizeSqlCyclopsData: finalizeSqlCyclopsData

In Cyclops: Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis

finalizeSqlCyclopsData

Description

finalizeSqlCyclopsData finalizes a Cyclops data object

Usage

finalizeSqlCyclopsData(
  object,
  addIntercept = FALSE,
  useOffsetCovariate = NULL,
  offsetAlreadyOnLogScale = FALSE,
  sortCovariates = FALSE,
  makeCovariatesDense = NULL
)

Arguments

object	Cyclops data object
addIntercept	Add an intercept covariate if one was not imported through SQL
useOffsetCovariate	Specify is a covariate should be used as an offset (fixed coefficient = 1). Set option to -1 to specify the time-to-event column, otherwise include a single numeric or character covariate name.
offsetAlreadyOnLogScale	Set to TRUE to indicate that offsets were log-transformed before importing into Cyclops data object.
sortCovariates	Sort covariates in numeric-order with intercept first if it exists.
makeCovariatesDense	List of numeric or character covariates names to densely represent in Cyclops data object. For efficiency, we suggest making at least the intercept dense.

Cyclops documentation built on June 22, 2024, 10:24 a.m.