Description Usage Arguments Value Examples
View source: R/getrawsignals.R
Computes the untransformed medians for cellular markers in populations of interest
1 2 | getrawsignals(cyto_session, markersofinterest, popsofinterest, exptID,
markerorder, stimterms, ptterms)
|
cyto_session |
- API authentication token for session |
markersofinterest |
- List of strings of markers of interest, corresponding to names in Cytobank |
popsofinterest |
- List of strings of populations of interest to calculate statistics |
exptID |
- Integer representing an experiment ID on Cytobank account |
markerorder |
- A list of stings corresponding to the desired marker order |
stimterms |
- A list of desired stimulation conditions to analyze in matrix |
ptterms |
- A list of desired sample conditions to analyze in matrix |
- Returns matrix of untransformed medians for cellular markers in populations of interest
1 2 3 4 5 6 7 8 9 10 | library(CytobankAPI)
cyto_session <- authenticate(site="premium", username="myusername", password="mypassword")
markersofinterest<-c("CD3","CD56")
popsofinterest<-c("CD4 T cells","NK cells")
exptID=4
markerorder<-c("CD4 T cells CD56","NK cells CD56","CD4 T cells CD3","NK cells CD3")
stimterms<-c("Unstim","IL-15")
ptterm<-c("Pt","Ctrl")
getrawsignals(cyto_session,markersofinterest,popsofinterest,exptID,markerorder,stimterms,
ptterms)
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