write_biogeobears_input: Write input files for BioGeoBEARS
In DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees
View source: R/write_biogeobears_input.R
write_biogeobears_input R Documentation
Write input files for BioGeoBEARS
Description
Write input files for a BioGeoBEARS analysis, i.e. a phlyogenetic tree in
Newick format and occurrence data in PHYLIP format.
Usage
write_biogeobears_input(phylod, path_to_phylo, path_to_biogeo)
Arguments
phylod
A phylo4d object from the package phylobase containing
phylogenetic and endemicity data for each species.
path_to_phylo
string specifying the path and name to write the phylogeny file to.
path_to_biogeo
string specifying the path and name to write the biogeography file to.
Value
Nothing, called for side-effects
DAISIEprep documentation built on April 3, 2025, 9:26 p.m.
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View source: R/write_biogeobears_input.R
| write_biogeobears_input | R Documentation |
Write input files for BioGeoBEARS
Description
Write input files for a BioGeoBEARS analysis, i.e. a phlyogenetic tree in Newick format and occurrence data in PHYLIP format.
Usage
write_biogeobears_input(phylod, path_to_phylo, path_to_biogeo)
Arguments
phylod |
A |
path_to_phylo |
string specifying the path and name to write the phylogeny file to. |
path_to_biogeo |
string specifying the path and name to write the biogeography file to. |
Value
Nothing, called for side-effects
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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