Files in DLMtool
Data-Limited Methods Toolkit

MD5
NEWS.md
DESCRIPTION
README.md
NAMESPACE
inst/OM.xlsx
inst/PObjTable.Rmd
inst/Atlantic_mackerel.csv
inst/China_rockfish.csv
inst/Simulation_1.csv
inst/Data.xlsx
inst/Gulf_blue_tilefish.csv
inst/Data.csv
inst/PObjTable2.Rmd inst/PLimitTable2.Rmd
inst/ourReefFish.csv
inst/Example_Chile_Hake.rmd inst/OM.rmd
inst/Example_Chile_Hake.xlsx
inst/Example_datafile.csv
inst/DFO_generic.Rmd inst/DFO_cosewic.Rmd
inst/Red_snapper.csv
inst/Cobia.csv
inst/PLimitTable.Rmd R/runMSE.r R/MPs_Mixed.R R/Misc_Exported.R R/Data_Functions.R R/Misc_Internal.R R/PMtable.R R/Data_make_update.R R/SS2DLM.R R/iSCAM2DLM.R R/aaImportFrom.R R/MPs_Output.R R/StochasticSRA.R R/OM_functions.R R/Data2csv.R R/RcppExports.R R/OM_init_doc.R R/SampleOM.R R/DefineClasses.r R/MSC.R R/MPs_SupportingFunctions.R R/PMobjects.R R/OM_Plotting.R
R/sysdata.rda
R/Awatea2OM.R R/popdyn.R R/Roxy_DataObjects.r R/DLMtool-package.R R/Sketch_Functions.R R/MSE_functions.R R/Blow_funcs.R R/Data_Plotting.R R/DFO.R R/data2OMfunctions.r R/IOTC.R R/Turing.R R/MSE_Plotting.R R/MPs_Reference.R R/MSE_Plotting_PMs.R R/Fease_Functions.R R/MPs_Input.R
src/movefit_Rcpp.cpp
src/LBSPR.cpp
src/LSRA_opt_cpp.cpp
src/genLenComp.cpp
src/RcppExports.cpp
src/popddynCPP.cpp
src/bhnoneq_Rcpp.cpp
man/Blow_opt.Rd man/DFO_plot.Rd man/MSEDescription.Rd man/Uses.Rd man/LSRA.Rd man/CC1.Rd man/show-MSE.Rd man/SPmod.Rd man/BK.Rd man/ItargetE1.Rd man/cv.Rd man/GB_slope.Rd man/Imp-class-objects.Rd man/OM-class.Rd man/movfit_Rcpp.Rd man/runInMP.Rd man/DynF.Rd man/Data2csv.Rd man/plotMPA.Rd man/plotStock.Rd man/show-Rec.Rd man/DBSRA.Rd man/MSE-class.Rd man/iVB.Rd man/plot.MSE.Rd man/Input.Rd man/ITM.Rd man/Data_xl.Rd man/Hist-class.Rd man/OMDescription.Rd man/SampleObsPars.Rd man/LSRA_MCMC_sim.Rd man/DFO_tab.Rd man/plot-OM.Rd man/Fleet-class.Rd man/DD_R.Rd man/gettempvar.Rd man/cheatsheets.Rd man/DataDescription.Rd man/Obs-class.Rd man/plotSelect.Rd man/DFO_bar.Rd man/MPurl.Rd man/plotFun.Rd man/hist2.Rd man/join_plots.Rd man/SPSRA_.Rd man/L2A.Rd man/OMdoc.Rd man/boxplot.Data.Rd man/getEffhist.Rd man/Turing.Rd man/StochasticSRAcpp.Rd man/optQ.Rd man/Itarget1.Rd man/plotM.Rd man/matlenlim.Rd man/SPslope.Rd man/summary-MSE.Rd man/MPtype.Rd man/getclass.Rd man/summary-Data.Rd man/Cos_thresh_tab.Rd man/VOIplot2.Rd man/DFO_spider.Rd man/PWhisker.Rd man/popdynCPP.Rd man/Ltarget1.Rd man/PMLimit.Rd man/TradePlot_old.Rd man/Cplot.Rd man/CALsimp.Rd man/DCAC_.Rd man/Required.Rd man/LSRA_opt.Rd man/cparscheck.Rd man/OMinit.Rd man/calcMean.Rd man/Can.Rd man/BlankSelPlot.Rd man/Fease.Rd man/Pplot2.Rd man/LBSPR_.Rd man/Islope_.Rd man/optMSY.Rd man/tinyErr.Rd man/barplot.MSE.Rd man/Fleet-class-objects.Rd man/Itarget_.Rd man/YPR.Rd man/curE.Rd man/IT5.Rd man/DLMtool-package.Rd man/plot.Data.Rd man/CanMP.Rd man/LstepCE1.Rd man/label.class-class.Rd man/plot-Fleet.Rd man/Islope1.Rd man/Sense.Rd man/YPR_.Rd man/SRAcomp.Rd man/avail.Rd man/checkMSE.Rd man/LH2OM.Rd man/getFref3.Rd man/FMSYref.Rd man/CSRA.Rd man/NAor0.Rd man/Converge.Rd man/LtargetE1.Rd man/LinInterp.Rd man/prob.class-class.Rd man/Stock-class-objects.Rd man/LHdatabase.Rd man/ChkYrs.Rd man/Tplot.Rd man/Range.Rd man/Choose.Rd man/makeMeanMP.Rd man/CompSRA_.Rd man/OneRep.Rd man/DCAC.Rd man/OMexample.Rd man/getAFC.Rd man/DFO_report.Rd man/Data-class.Rd man/TACfilter.Rd man/DOM.Rd man/CSRAfunc.Rd man/Fadapt.Rd man/SampleCpars.Rd man/Fdem_.Rd man/ObsDescription.Rd man/applyMP.Rd man/EtargetLopt.Rd man/testOM.Rd man/TradePlot.Rd man/plot-Imp.Rd man/LBSPRgen.Rd man/ChkObj.Rd man/LSRA_opt_cpp.Rd man/DFO_plot2.Rd man/VOIplot.Rd man/AvC_MLL.Rd man/SampleFleetPars.Rd man/DFO_tab_formatted.Rd man/Iratio.Rd man/XL2Data.Rd man/SBT1.Rd man/writeCSV.Rd man/AvC.Rd man/DFO_quant.Rd man/DLMextra.Rd man/Replace.Rd man/Growth2OM.Rd man/LW2OM.Rd man/calcProb.Rd man/makePerf.Rd man/Fratio.Rd man/sdconv.Rd man/PerformanceMetric.Rd man/PMobj-class.Rd man/Imp-class.Rd man/FleetDescription.Rd man/getBlow.Rd man/validcpars.Rd man/SampleImpPars.Rd man/ITe5.Rd man/Rcontrol.Rd man/Fdem.Rd man/wormplot.Rd man/Obs-class-objects.Rd man/DataInit.Rd man/replic8.Rd man/Gcontrol.Rd man/DLMenv.Rd man/XL2OM.Rd man/Fratio_.Rd man/getr.Rd man/StochasticSRA.Rd man/TAC.Rd man/getq3.Rd man/compplot.Rd man/MPStats.Rd man/DDe.Rd man/userguide.Rd man/SketchFun.Rd man/popdynOneTScpp.Rd man/LSRA2.Rd man/demographic2.Rd man/GB_target.Rd man/CompSRA.Rd man/Pplot.Rd man/makeTransparent.Rd man/tiny.Rd man/initialize-methods.Rd man/getsel.Rd man/SubCpars.Rd man/SPMSY.Rd man/ImpDescription.Rd man/condmet.Rd man/DTe40.Rd man/MRreal.Rd man/optCPU.Rd man/plot-Obs.Rd man/Itargeteff_.Rd man/SimulatedData.Rd man/ReqData.Rd man/SRAsim.Rd man/DBSRAopt.Rd man/SubOM.Rd man/sampy.Rd man/Thresh_tab.Rd man/dnormal.Rd man/runMP.Rd man/IOTC_plot.Rd man/Stock-class.Rd man/VOI2.Rd man/LstepCC1.Rd man/RealFease.Rd man/runCOSEWIC.Rd man/StockDescription.Rd man/Data-class-objects.Rd man/plotOFL.Rd man/joinData.Rd man/DD_.Rd man/runMSE.Rd man/VOI.Rd man/GB_CC.Rd man/sample_steepness2.Rd man/Kplot.Rd man/alphaconv.Rd man/MCD.Rd man/NOAA_plot.Rd man/DFO_hist.Rd man/Sub.Rd man/getmov2.Rd man/LBSPR.Rd man/FilterSmooth.Rd man/ML2D.Rd man/SampleStockPars.Rd man/simCAA.Rd man/Rec-class.Rd man/Itarget1_MPA.Rd man/DFO_proj.Rd man/Lratio_BHI.Rd man/ICI.Rd man/ForceCor.Rd man/DD.Rd man/simCAL.Rd man/CC.Rd man/IT_.Rd man/trlnorm.Rd man/SPSRA.Rd man/setup.Rd man/DLMDataDir.Rd man/DBSRA_.Rd tests/manual/run-tests-code.R tests/manual/coverage.R tests/manual/run-tests-thorough.R tests/manual/test-code/test-Data_Functions.R tests/manual/test-code/test-runMSE.R tests/manual/test-code/test-RealIndices.R tests/manual/test-code/test-Fease_Functions.R tests/manual/test-code/test-OM_Plotting.R tests/manual/test-code/test-PMobjects.R tests/manual/test-code/test-MPs.R tests/manual/test-code/test-MSE_Plotting.R tests/manual/test-code/test-MSE_functions.R tests/manual/test-code/test-Data_Plotting.R tests/manual/test-code/test-cpars.R tests/manual/test-code/test-OM_init_doc.R tests/manual/test-code/test-slotDescription.R tests/manual/test-code/test-Import_Data.R tests/manual/test-code/test-checkPopdyn.R tests/manual/test-code/test-Data2csv.R tests/manual/test-code/test-OM_functions.R tests/manual/test_dev/popdyn_tests.R tests/manual/old_stuff_delete_soon/test_01_runMSE_testOM.R tests/manual/old_stuff_delete_soon/test_05a_Can_Cant_allData.R tests/manual/old_stuff_delete_soon/run-coverage_code.R tests/manual/old_stuff_delete_soon/test_04a_runMSE_allOM_allMP.R tests/manual/old_stuff_delete_soon/test_03a_testPlotting.R tests/manual/old_stuff_delete_soon/runtests_long.R tests/manual/old_stuff_delete_soon/test-Imp.R tests/manual/old_stuff_delete_soon/test_02a_runMSE_all_builtin_OMs.R tests/manual/old_stuff_delete_soon/test_02_runMSE_9_builtin_OMs.R tests/manual/old_stuff_delete_soon/test-discard.R
data/OMDescription.RData
data/DataDescription.RData
data/Precise_Unbiased.RData
data/Cobia.RData
data/Imprecise_Biased.RData
data/Herring.RData
data/ImpDescription.RData
data/FlatE_Dom.RData
data/DecE_NDom.RData
data/FlatE_HDom.RData
data/Generic_Obs.RData
data/Atlantic_mackerel.RData
data/Target_All_Fish.RData
data/IncE_HDom.RData
data/Butterfish.RData
data/Perfect_Info.RData
data/Generic_IncE.RData
data/SimulatedData.RData
data/MSEDescription.RData
data/Rockfish.RData
data/ourReefFish.RData
data/LHdatabase.RData
data/Example_datafile.RData
data/Imprecise_Unbiased.RData
data/Overages.RData
data/Albacore.RData
data/Bluefin_tuna.RData
data/Targeting_Small_Fish.RData
data/tiny.RData
data/DecE_Dom.RData
data/Gulf_blue_tilefish.RData
data/Precise_Biased.RData
data/Bluefin_tuna_WAtl.RData
data/Porgy.RData
data/Sole.RData
data/Simulation_1.RData
data/StockDescription.RData
data/Toothfish.RData
data/China_rockfish.RData
data/DecE_HDom.RData
data/Snapper.RData
data/Generic_Fleet.RData
data/Perfect_Imp.RData
data/FleetDescription.RData
data/datalist
data/ObsDescription.RData
data/Low_Effort_Non_Target.RData
data/ReqData.RData
data/Generic_DecE.RData
data/FlatE_NDom.RData
data/Mackerel.RData
data/testOM.RData
data/Red_snapper.RData
data/Generic_FlatE.RData
data/Blue_shark.RData
data/IncE_NDom.RData
DLMtool documentation built on March 7, 2019, 1:05 a.m.