DNAtools: Tools for Analysing Forensic Genetic DNA Data

Computationally efficient tools for comparing all pairs of profiles in a DNA database. The expectation and covariance of the summary statistic is implemented for fast computing. Routines for estimating proportions of close related individuals are available. The use of wildcards (also called F-designation) is implemented. Dedicated functions ease plotting the results.

AuthorTorben Tvedebrink <tvede@math.aau.dk> and James Curran <j.curran@auckland.ac.nz>. Mikkel Meyer Andersen <mikl@math.aau.dk> assisted on the multicore/CPU implementation.
Date of publication2016-12-05 18:28:46
MaintainerTorben Tvedebrink <tvede@math.aau.dk>
LicenseGPL (>= 2)
Version0.1-21.1

View on CRAN

Files in this package

DNAtools
DNAtools/inst
DNAtools/inst/doc
DNAtools/inst/doc/DNAtools.pdf
DNAtools/inst/doc/DNAtools.Rnw
DNAtools/src
DNAtools/src/rcpp_hello_world.cpp
DNAtools/src/DNTRare.h
DNAtools/src/profile.cpp
DNAtools/src/profile.h
DNAtools/src/mcompare.cpp
DNAtools/src/DNTRare.cpp
DNAtools/src/RcppExports.cpp
DNAtools/src/prob.cpp
DNAtools/NAMESPACE
DNAtools/data
DNAtools/data/dbExample.RData
DNAtools/R
DNAtools/R/dbcompare.R DNAtools/R/variance.R DNAtools/R/plot.R DNAtools/R/rarity.R DNAtools/R/score.R DNAtools/R/optim.relatedness.R DNAtools/R/prob.R DNAtools/R/RcppExports.R DNAtools/R/induceRare.R DNAtools/R/simulate.R DNAtools/R/freqEst.R DNAtools/R/numberOfAlleles.R DNAtools/R/rareallele.R
DNAtools/vignettes
DNAtools/vignettes/Makefile
DNAtools/vignettes/DNAtools.tex
DNAtools/vignettes/DNAtools.Rnw
DNAtools/vignettes/caucasianObsExp.pdf
DNAtools/MD5
DNAtools/build
DNAtools/build/vignette.rds
DNAtools/DESCRIPTION
DNAtools/man
DNAtools/man/relatedness.Rd DNAtools/man/print.dbcompare.Rd DNAtools/man/dbcollapse.Rd DNAtools/man/dbExample.Rd DNAtools/man/plot.dbOptim.Rd DNAtools/man/pContrib.Rd DNAtools/man/noaTabs.Rd DNAtools/man/pContrib.locus.Rd DNAtools/man/print.dbOptim.Rd DNAtools/man/freqEst.Rd DNAtools/man/dbcompare.Rd DNAtools/man/estimatePD.Rd DNAtools/man/DNAtools-package.Rd DNAtools/man/rarityVar.Rd DNAtools/man/dbsimulate.Rd DNAtools/man/rarity.Rd DNAtools/man/plot.dbcompare.Rd DNAtools/man/noa.Rd DNAtools/man/rcpp_hello_world.Rd

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