DNAtools: Tools for Analysing Forensic Genetic DNA Data

Computationally efficient tools for comparing all pairs of profiles in a DNA database. The expectation and covariance of the summary statistic is implemented for fast computing. Routines for estimating proportions of close related individuals are available. The use of wildcards (also called F-designation) is implemented. Dedicated functions ease plotting the results.

Author
Torben Tvedebrink <tvede@math.aau.dk> and James Curran <j.curran@auckland.ac.nz>. Mikkel Meyer Andersen <mikl@math.aau.dk> assisted on the multicore/CPU implementation.
Date of publication
2016-07-12 07:39:10
Maintainer
Torben Tvedebrink <tvede@math.aau.dk>
License
GPL (>= 2)
Version
0.1-21.1

View on CRAN

Man pages

dbcollapse
Collapse m/p output to vector
dbcompare
Compare DNA profiles
dbExample
Simulated database with 1,000 individuals
dbsimulate
Simulate a DNA database
DNAtools-package
Tools for analysing forensic genetic DNA databases
estimatePD
Estimate the drop-out probability based on number of alleles
freqEst
Simple allele frequency estimation
noa
The exact distribution of the number of alleles in a m-person...
noaTabs
Computes the alpha_m variants and their weights.
pContrib
Compute the posterior probabilities for P(m|n0) for a given...
pContrib.locus
Compute the posterior probabilities for P(m|n0) for a given...
plot.dbcompare
Plots the summary matrix
plot.dbOptim
Plots the fitted object function for estimated familial...
print.dbcompare
Prints the summary matrix
print.dbOptim
Prints the results from optim.relatedness()
rarity
Expected value of cell counts in DNA database comparison
rarityVar
Covariance matrix of cell counts in DNA database comparison
rcpp_hello_world
Simple function using Rcpp
relatedness
Estimate theta and the fraction of comparisons between close...

Files in this package

DNAtools
DNAtools/inst
DNAtools/inst/doc
DNAtools/inst/doc/DNAtools.pdf
DNAtools/inst/doc/DNAtools.Rnw
DNAtools/src
DNAtools/src/rcpp_hello_world.cpp
DNAtools/src/DNTRare.h
DNAtools/src/profile.cpp
DNAtools/src/profile.h
DNAtools/src/mcompare.cpp
DNAtools/src/DNTRare.cpp
DNAtools/src/RcppExports.cpp
DNAtools/src/prob.cpp
DNAtools/NAMESPACE
DNAtools/data
DNAtools/data/dbExample.RData
DNAtools/R
DNAtools/R/dbcompare.R
DNAtools/R/variance.R
DNAtools/R/plot.R
DNAtools/R/rarity.R
DNAtools/R/score.R
DNAtools/R/optim.relatedness.R
DNAtools/R/prob.R
DNAtools/R/RcppExports.R
DNAtools/R/induceRare.R
DNAtools/R/simulate.R
DNAtools/R/freqEst.R
DNAtools/R/numberOfAlleles.R
DNAtools/R/rareallele.R
DNAtools/vignettes
DNAtools/vignettes/Makefile
DNAtools/vignettes/DNAtools.tex
DNAtools/vignettes/DNAtools.Rnw
DNAtools/vignettes/caucasianObsExp.pdf
DNAtools/MD5
DNAtools/build
DNAtools/build/vignette.rds
DNAtools/DESCRIPTION
DNAtools/man
DNAtools/man/relatedness.Rd
DNAtools/man/print.dbcompare.Rd
DNAtools/man/dbcollapse.Rd
DNAtools/man/dbExample.Rd
DNAtools/man/plot.dbOptim.Rd
DNAtools/man/pContrib.Rd
DNAtools/man/noaTabs.Rd
DNAtools/man/pContrib.locus.Rd
DNAtools/man/print.dbOptim.Rd
DNAtools/man/freqEst.Rd
DNAtools/man/dbcompare.Rd
DNAtools/man/estimatePD.Rd
DNAtools/man/DNAtools-package.Rd
DNAtools/man/rarityVar.Rd
DNAtools/man/dbsimulate.Rd
DNAtools/man/rarity.Rd
DNAtools/man/plot.dbcompare.Rd
DNAtools/man/noa.Rd
DNAtools/man/rcpp_hello_world.Rd