topSVGs: Return the top n SVGs
In DR.SC: Joint Dimension Reduction and Spatial Clustering
topSVGs R Documentation
Return the top n SVGs
Description
Return top n spatially variable genes given a Seurat object performed by FindSVGs.
Usage
topSVGs(seu, ntop=5)
Arguments
seu
an object of class "Seurat".
ntop
an optional positive integer, means how many spatially variable genes to access.
Details
Nothing
Value
return a character vector including the names of SVGs.
Note
nothing
Author(s)
Wei Liu
References
None
See Also
topSVGs
Examples
seu <- gendata_RNAExp(height=20, width=20,p=200, K=4)
seu <- FindSVGs(seu, nfeatures=100, verbose=FALSE)
(genes <- topSVGs(seu, ntop=10))
DR.SC documentation built on Aug. 10, 2023, 1:10 a.m.
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| topSVGs | R Documentation |
Return the top n SVGs
Description
Return top n spatially variable genes given a Seurat object performed by FindSVGs.
Usage
topSVGs(seu, ntop=5)
Arguments
seu |
an object of class "Seurat". |
ntop |
an optional positive integer, means how many spatially variable genes to access. |
Details
Nothing
Value
return a character vector including the names of SVGs.
Note
nothing
Author(s)
Wei Liu
References
None
See Also
topSVGs
Examples
seu <- gendata_RNAExp(height=20, width=20,p=200, K=4)
seu <- FindSVGs(seu, nfeatures=100, verbose=FALSE)
(genes <- topSVGs(seu, ntop=10))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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