DVHmetrics: Analyze Dose-Volume Histograms and Check Constraints
Version 0.3.6

Functionality for analyzing dose-volume histograms (DVH) in radiation oncology: Read DVH text files, calculate DVH metrics as well as generalized equivalent uniform dose (gEUD), biologically effective dose (BED), equivalent dose in 2 Gy fractions (EQD2), normal tissue complication probability (NTCP), and tumor control probability (TCP). Show DVH diagrams, check and visualize quality assurance constraints for the DVH. Includes web-based graphical user interface.

Browse man pages Browse package API and functions Browse package files

AuthorDaniel Wollschlaeger [aut, cre], Heiko Karle [aut], Heinz Schmidberger [ctb]
Date of publication2016-07-29 18:27:01
MaintainerDaniel Wollschlaeger <wollschlaeger@uni-mainz.de>
LicenseGPL (>= 2)
Version0.3.6
URL https://github.com/dwoll/DVHmetrics/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DVHmetrics")

Man pages

checkConstraint: Check constraints on dose-volume histograms (DVH)
convertDVH: Convert between differential and cumulative DVH
convertDVHsmooth: Convert between differential and cumulative DVH
dataConstr: Constraint data frame
dataMZ: DVH data from 3 patients
DVHmetrics-package: Analyze Dose-Volume Histograms and Check Constraints
getBED: Calculate biologically effective dose (BED)
getDMEAN: DMEAN and other dose metrics
getEQD2: 2Gy fractions biologically equivalent dose (EQD2)
getEUD: Generalized equivalent uniform dose (gEUD)
getIsoEffD: Isoeffective dose calculation
getMeanDVH: Point-wise mean DVH with point-wise SDs
getMetric: Calculate dose-volume-histogram metrics
getNTCP: Normal tissue complication probability (NTCP)
getTCP: Tumor control probability (TCP)
mergeDVH: Merge existing DVH objects
print: Print basic information about one or more DVHs
readConstraint: Read constraint definitions from text file
readDVH: Read DVH text files
runGUI: Open web-based GUI in browser
saveConstraint: Save constraint result to file
saveDVH: Save DVH diagram to file
saveMetric: Save DVH metrics to file
showConstraint: Display constraints for cumulative dose-volume histograms
showDVH: Display dose volume histograms
showMeanDVH: Show average dose volume histograms

Functions

DVHmetrics Man page
DVHmetrics-package Man page
checkConstraint Man page Source code
checkConstraint.DVHLst Man page Source code
checkConstraint.DVHLstLst Man page Source code
checkConstraint.DVHs Man page Source code
collWS Source code
combineDVHs Source code
constrDF2L Source code
constrDF2L1 Source code
convertDVH Man page Source code
convertDVH.DVHLst Man page Source code
convertDVH.DVHLstLst Man page Source code
convertDVH.DVHs Man page Source code
convertDVH.matrix Man page Source code
convertDVHsmooth Man page Source code
convertDVHsmooth.DVHLst Man page Source code
convertDVHsmooth.DVHLstLst Man page Source code
convertDVHsmooth.DVHs Man page Source code
convertDVHsmooth.matrix Man page Source code
dataConstr Man page
dataMZ Man page
dvhDistance Source code
dvhType Source code
expandConstraint Source code
getBED Man page Source code
getBED.DVHLst Man page Source code
getBED.DVHLstLst Man page Source code
getBED.DVHs Man page Source code
getBED.default Man page Source code
getConvFac Source code
getDMEAN Man page Source code
getDMEAN.DVHLst Man page Source code
getDMEAN.DVHLstLst Man page Source code
getDMEAN.DVHs Man page Source code
getEQD2 Man page Source code
getEQD2.DVHLst Man page Source code
getEQD2.DVHLstLst Man page Source code
getEQD2.DVHs Man page Source code
getEQD2.default Man page Source code
getEUD Man page Source code
getEUD.DVHLst Man page Source code
getEUD.DVHLstLst Man page Source code
getEUD.DVHs Man page Source code
getHI Source code
getHI.DVHLst Source code
getHI.DVHLstLst Source code
getHI.DVHs Source code
getInterpLin Source code
getInterpSpl Source code
getIsoEffD Man page Source code
getIsoEffD.DVHLst Man page Source code
getIsoEffD.DVHLstLst Man page Source code
getIsoEffD.DVHs Man page Source code
getIsoEffD.default Man page Source code
getKSmooth Source code
getMeanDVH Man page Source code
getMeanDVH.DVHLst Man page Source code
getMeanDVH.DVHLstLst Man page Source code
getMeanDVH.DVHs Man page Source code
getMetric Man page Source code
getMetric.DVHLst Man page Source code
getMetric.DVHLstLst Man page Source code
getMetric.DVHs Man page Source code
getNTCP Man page Source code
getNTCP.DVHLst Man page Source code
getNTCP.DVHLstLst Man page Source code
getNTCP.DVHs Man page Source code
getSmoothSpl Source code
getSpecialMetrics Source code
getTCP Man page Source code
getUnits Source code
harmoConstrDVH Source code
harmoConstrDVH.DVHLst Source code
harmoConstrDVH.DVHLstLst Source code
isIncreasing Source code
mergeDVH Man page Source code
mergePinnaclePat Source code
parseCadplan Source code
parseConstraint Source code
parseDVH Source code Source code
parseEclipse Source code
parseHiArt Source code
parseMasterplan Source code
parseMetric Source code
parseMonaco Source code
parsePinnacleDVH Source code
parseRayStation Source code
print.DVHLst Man page Source code
print.DVHLstLst Man page Source code
print.DVHs Man page Source code
readConstraint Man page Source code
readDVH Man page Source code
recycle Source code
removeWS Source code
reorgByPat Source code
runGUI Man page Source code
saveConstraint Man page Source code
saveDVH Man page Source code
saveMetric Man page Source code
saveMetric.data.frame Man page Source code
saveMetric.list Man page Source code
showConstraint Man page Source code
showConstraint.DVHLst Man page Source code
showConstraint.DVHLstLst Man page Source code
showConstraint.DVHs Man page Source code
showDVH Man page Source code
showDVH.DVHLst Man page Source code
showDVH.DVHLstLst Man page Source code
showDVH.DVHs Man page Source code
showMeanDVH Man page Source code
trimWS Source code

Files

inst
inst/DVHshiny
inst/DVHshiny/ui.R
inst/DVHshiny/server.R
inst/DVHshiny/helper.R
inst/DVHshiny/ABOUT.md
inst/DVHnotebooks
inst/DVHnotebooks/DVHmetrics.ipynb
inst/ChangeLog
inst/doc
inst/doc/DVHshiny.pdf
inst/doc/DVHmetrics.pdf
inst/doc/DVHshiny.R
inst/doc/DVHmetrics.R
inst/doc/DVHshiny.Rnw
inst/doc/DVHmetrics.Rnw
NAMESPACE
data
data/dataConstr.rda
data/dataMZ.rda
R
R/getBED.R
R/reorgByPat.R
R/getDMEAN.R
R/dvhDistance.R
R/parseMonaco.R
R/parseHiArt.R
R/readConstraint.R
R/parsePinnacleDVH.R
R/unitConversion.R
R/showConstraint.R
R/getIsoEffD.R
R/getMeanDVH.R
R/parseRayStation.R
R/showDVH.R
R/getEUD.R
R/windows
R/windows/parseDVH.R
R/parseEclipse.R
R/readDVH.R
R/parseConstraint.R
R/getHI.R
R/showMeanDVH.R
R/print.R
R/getNTCP.R
R/smoothDVH.R
R/checkConstraint.R
R/runGUI.R
R/save.R
R/unix
R/unix/parseDVH.R
R/parseMetric.R
R/convertDVH.R
R/getEQD2.R
R/parseMasterplan.R
R/getMetric.R
R/harmoConstrDVH.R
R/convertDVHsmooth.R
R/parseCadplan.R
vignettes
vignettes/appFileOpen.jpg
vignettes/appShowConstr.jpg
vignettes/appCheckConstr.jpg
vignettes/DVHshiny.Rnw
vignettes/lit.bib
vignettes/appMetrics.jpg
vignettes/constraintsExcel.jpg
vignettes/DVHmetrics.Rnw
vignettes/appShowDVH.jpg
MD5
build
build/vignette.rds
DESCRIPTION
man
man/getIsoEffD.Rd
man/readConstraint.Rd
man/mergeDVH.Rd
man/dataMZ.Rd
man/saveConstraint.Rd
man/showMeanDVH.Rd
man/saveMetric.Rd
man/showDVH.Rd
man/getMeanDVH.Rd
man/getBED.Rd
man/readDVH.Rd
man/checkConstraint.Rd
man/DVHmetrics-package.Rd
man/getDMEAN.Rd
man/getMetric.Rd
man/saveDVH.Rd
man/getEQD2.Rd
man/getEUD.Rd
man/getTCP.Rd
man/convertDVH.Rd
man/showConstraint.Rd
man/convertDVHsmooth.Rd
man/runGUI.Rd
man/getNTCP.Rd
man/print.Rd
man/dataConstr.Rd
DVHmetrics documentation built on May 19, 2017, 3:30 p.m.