DVHmetrics: Analyze Dose-Volume Histograms and Check Constraints

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Functionality for analyzing dose-volume histograms (DVH) in radiation oncology: Read DVH text files, calculate DVH metrics as well as generalized equivalent uniform dose (gEUD), biologically effective dose (BED), equivalent dose in 2 Gy fractions (EQD2), normal tissue complication probability (NTCP), and tumor control probability (TCP). Show DVH diagrams, check and visualize quality assurance constraints for the DVH. Includes web-based graphical user interface.

Author
Daniel Wollschlaeger [aut, cre], Heiko Karle [aut], Heinz Schmidberger [ctb]
Date of publication
2016-07-29 18:27:01
Maintainer
Daniel Wollschlaeger <wollschlaeger@uni-mainz.de>
License
GPL (>= 2)
Version
0.3.6
URLs

View on CRAN

Man pages

checkConstraint
Check constraints on dose-volume histograms (DVH)
convertDVH
Convert between differential and cumulative DVH
convertDVHsmooth
Convert between differential and cumulative DVH
dataConstr
Constraint data frame
dataMZ
DVH data from 3 patients
DVHmetrics-package
Analyze Dose-Volume Histograms and Check Constraints
getBED
Calculate biologically effective dose (BED)
getDMEAN
DMEAN and other dose metrics
getEQD2
2Gy fractions biologically equivalent dose (EQD2)
getEUD
Generalized equivalent uniform dose (gEUD)
getIsoEffD
Isoeffective dose calculation
getMeanDVH
Point-wise mean DVH with point-wise SDs
getMetric
Calculate dose-volume-histogram metrics
getNTCP
Normal tissue complication probability (NTCP)
getTCP
Tumor control probability (TCP)
mergeDVH
Merge existing DVH objects
print
Print basic information about one or more DVHs
readConstraint
Read constraint definitions from text file
readDVH
Read DVH text files
runGUI
Open web-based GUI in browser
saveConstraint
Save constraint result to file
saveDVH
Save DVH diagram to file
saveMetric
Save DVH metrics to file
showConstraint
Display constraints for cumulative dose-volume histograms
showDVH
Display dose volume histograms
showMeanDVH
Show average dose volume histograms

Files in this package

DVHmetrics
DVHmetrics/inst
DVHmetrics/inst/DVHshiny
DVHmetrics/inst/DVHshiny/ui.R
DVHmetrics/inst/DVHshiny/server.R
DVHmetrics/inst/DVHshiny/helper.R
DVHmetrics/inst/DVHshiny/ABOUT.md
DVHmetrics/inst/DVHnotebooks
DVHmetrics/inst/DVHnotebooks/DVHmetrics.ipynb
DVHmetrics/inst/ChangeLog
DVHmetrics/inst/doc
DVHmetrics/inst/doc/DVHshiny.pdf
DVHmetrics/inst/doc/DVHmetrics.pdf
DVHmetrics/inst/doc/DVHshiny.R
DVHmetrics/inst/doc/DVHmetrics.R
DVHmetrics/inst/doc/DVHshiny.Rnw
DVHmetrics/inst/doc/DVHmetrics.Rnw
DVHmetrics/NAMESPACE
DVHmetrics/data
DVHmetrics/data/dataConstr.rda
DVHmetrics/data/dataMZ.rda
DVHmetrics/R
DVHmetrics/R/getBED.R
DVHmetrics/R/reorgByPat.R
DVHmetrics/R/getDMEAN.R
DVHmetrics/R/dvhDistance.R
DVHmetrics/R/parseMonaco.R
DVHmetrics/R/parseHiArt.R
DVHmetrics/R/readConstraint.R
DVHmetrics/R/parsePinnacleDVH.R
DVHmetrics/R/unitConversion.R
DVHmetrics/R/showConstraint.R
DVHmetrics/R/getIsoEffD.R
DVHmetrics/R/getMeanDVH.R
DVHmetrics/R/parseRayStation.R
DVHmetrics/R/showDVH.R
DVHmetrics/R/getEUD.R
DVHmetrics/R/windows
DVHmetrics/R/windows/parseDVH.R
DVHmetrics/R/parseEclipse.R
DVHmetrics/R/readDVH.R
DVHmetrics/R/parseConstraint.R
DVHmetrics/R/getHI.R
DVHmetrics/R/showMeanDVH.R
DVHmetrics/R/print.R
DVHmetrics/R/getNTCP.R
DVHmetrics/R/smoothDVH.R
DVHmetrics/R/checkConstraint.R
DVHmetrics/R/runGUI.R
DVHmetrics/R/save.R
DVHmetrics/R/unix
DVHmetrics/R/unix/parseDVH.R
DVHmetrics/R/parseMetric.R
DVHmetrics/R/convertDVH.R
DVHmetrics/R/getEQD2.R
DVHmetrics/R/parseMasterplan.R
DVHmetrics/R/getMetric.R
DVHmetrics/R/harmoConstrDVH.R
DVHmetrics/R/convertDVHsmooth.R
DVHmetrics/R/parseCadplan.R
DVHmetrics/vignettes
DVHmetrics/vignettes/appFileOpen.jpg
DVHmetrics/vignettes/appShowConstr.jpg
DVHmetrics/vignettes/appCheckConstr.jpg
DVHmetrics/vignettes/DVHshiny.Rnw
DVHmetrics/vignettes/lit.bib
DVHmetrics/vignettes/appMetrics.jpg
DVHmetrics/vignettes/constraintsExcel.jpg
DVHmetrics/vignettes/DVHmetrics.Rnw
DVHmetrics/vignettes/appShowDVH.jpg
DVHmetrics/MD5
DVHmetrics/build
DVHmetrics/build/vignette.rds
DVHmetrics/DESCRIPTION
DVHmetrics/man
DVHmetrics/man/getIsoEffD.Rd
DVHmetrics/man/readConstraint.Rd
DVHmetrics/man/mergeDVH.Rd
DVHmetrics/man/dataMZ.Rd
DVHmetrics/man/saveConstraint.Rd
DVHmetrics/man/showMeanDVH.Rd
DVHmetrics/man/saveMetric.Rd
DVHmetrics/man/showDVH.Rd
DVHmetrics/man/getMeanDVH.Rd
DVHmetrics/man/getBED.Rd
DVHmetrics/man/readDVH.Rd
DVHmetrics/man/checkConstraint.Rd
DVHmetrics/man/DVHmetrics-package.Rd
DVHmetrics/man/getDMEAN.Rd
DVHmetrics/man/getMetric.Rd
DVHmetrics/man/saveDVH.Rd
DVHmetrics/man/getEQD2.Rd
DVHmetrics/man/getEUD.Rd
DVHmetrics/man/getTCP.Rd
DVHmetrics/man/convertDVH.Rd
DVHmetrics/man/showConstraint.Rd
DVHmetrics/man/convertDVHsmooth.Rd
DVHmetrics/man/runGUI.Rd
DVHmetrics/man/getNTCP.Rd
DVHmetrics/man/print.Rd
DVHmetrics/man/dataConstr.Rd