API for Eagle
Multiple Locus Association Mapping on a Genome-Wide Scale
| Global functions | |
|---|---|
| .build_design_matrix | Source code |
| .calcMMt | Source code |
| .calcVC | Source code |
| .calc_extBIC | Source code |
| .calc_extBIC_MLE | Source code |
| .find_qtl | Source code |
| .form_results | Source code |
| .onAttach | Source code |
| .print_final | Source code |
| .print_header | Source code |
| .print_results | Source code |
| .print_title | Source code |
| AM | Man page Source code |
| Eagle | Man page |
| Eagle-package | Man page |
| FPR4AM | Man page Source code |
| GenomicRel | Source code |
| IsItBigger | Source code |
| OpenGUI | Man page Source code |
| PlotAM | Man page Source code |
| ReadBlock | Source code |
| ReadBlockBin | Source code |
| ReadMap | Man page Source code |
| ReadMarker | Man page Source code |
| ReadPheno | Man page Source code |
| ReadVCF | Source code |
| ReadZmat | Man page Source code |
| ReshapeM | Source code |
| ReshapeM_rcpp | Source code |
| SummaryAM | Man page Source code |
| calculateH | Source code |
| calculateMMt | Source code |
| calculateMMt_rcpp | Source code |
| calculateMMt_sqrt_and_sqrtinv | Source code |
| calculateP | Source code |
| calculate_a_and_vara | Source code |
| calculate_a_and_vara_batch | Source code |
| calculate_a_and_vara_batch_rcpp | Source code |
| calculate_a_and_vara_rcpp | Source code |
| calculate_reduced_a | Source code |
| calculate_reduced_a_batch | Source code |
| calculate_reduced_a_rcpp | Source code |
| calculate_reduced_vara | Source code |
| check.for.NA.in.trait | Source code |
| check.inputs | Source code |
| constructX | Source code |
| create.ascii | Source code |
| create.bin | Source code |
| create.vcf.bin | Source code |
| createM_ASCII_rcpp | Source code |
| createM_BIN_rcpp | Source code |
| createMt_ASCII_rcpp | Source code |
| createMt_BIN_rcpp | Source code |
| create_vcf_BIN_rcpp | Source code |
| doquiet | Source code |
| extract_geno | Source code |
| extract_geno_Mt | Source code |
| extract_geno_Mt_rcpp | Source code |
| extract_geno_rcpp | Source code |
| fasttimer | Source code |
| fullpath | Source code |
| getRowColumn | Source code |
