Files in Eagle

Multiple Locus Association Mapping on a Genome-Wide Scale

MD5

NEWS

NAMESPACE

DESCRIPTION

R/RcppExports.R R/extract_geno_Mt.R R/ReadMap.R R/ReadPheno.R R/calculateMMt.R R/emma_delta_ML_LL_w_Z.R R/check_for_NA_in_trait.R R/create_bin.R R/ReadZmat.R R/calculateH.R R/emma_delta_ML_LL_wo_Z.R R/print_header.R R/calculate_reduced_a_batch.R R/emma_delta_ML_dLL_w_Z.R R/calcVC.R R/AM.R R/create_ascii.R R/emma_delta_REML_dLL_w_Z.R R/create_vcf_bin.R R/doquiet.R R/constructX.R R/emma_REMLE.R R/build_design_matrix.R R/emma_eigen_L_w_Z.R R/PlotAM.R R/ReadMarkerBin.R R/calculateMMt_sqrt_and_sqrtinv.R R/FPR4AM.R R/calcMMt.R R/calc_extBIC.R R/form_results.R R/emma_delta_REML_LL_w_Z.R R/calculate_a_and_vara_batch.R R/calculate_reduced_vara.R R/onAttach.R R/emma_misc.R R/GenomicRel.R R/emma_eigen_L_wo_Z.R R/print_title.R R/find_qtl.R R/OpenGUI.R R/summary_am.R R/extract_geno.R R/check_inputs.R R/print_final.R R/check_inputs_mlam.R R/print_results.R R/calc_extBIC_MLE.R R/calculate_reduced_a.R R/emma_eigen_R_wo_Z.R R/ReshapeM.R R/calculateP.R R/ReadVCF.R R/emma_eigen_R_w_Z.R R/emma_MLE.R R/calculate_a_and_vara.R R/fullpath.R

src/Makevars.win

src/Makevars

src/CreateBIN_PLINK.cpp

src/getNumColumns.cpp

src/CreateBIN.cpp

src/RcppExports.cpp

src/getRowColumn.cpp

src/createM_ASCII_rcpp.h

src/createMt_BIN_rcpp.cpp

src/extract_geno_rcpp.cpp

src/getNumRows.cpp

src/calculate_reduced_a_rcpp.cpp

src/createM_ASCII_rcpp.cpp

src/create_vcf_BIN_rcpp.cpp

src/calculate_a_and_vara_batch_rcpp.cpp

src/Eagle.h

src/createMt_ASCII_rcpp.cpp

src/createM_BIN_rcpp.h

src/ReshapeM_rcpp.cpp

src/createM_BIN_rcpp.cpp

src/removeRow.cpp

src/readblock.h

src/CreateASCIInospace.cpp

src/CreateASCIInospace_PLINK.cpp

src/extract_geno_Mt_rcpp.cpp

src/ReadBlockBin.cpp

src/removeColumn.cpp

src/ReadBlock.cpp

src/calculateMMt_rcpp.cpp

src/calculate_a_and_vara_rcpp.cpp

src/fasttimer.cpp

inst/CITATION

inst/extdata/Z.txt

inst/extdata/geno.ped

inst/extdata/geno.vcf

inst/extdata/pheno.txt

inst/extdata/map.txt

inst/extdata/geno.txt

inst/shiny_app/app.R inst/shiny_app/faq.rmd

inst/shiny_app/css.css

inst/shiny_app/help.html

inst/shiny_app/www/loading.gif

inst/shiny_app/www/images/homescreen.jpg

inst/shiny_app/www/images/plot_banner.jpg

inst/shiny_app/www/images/Zmat_banner.jpg

inst/shiny_app/www/images/pheno_banner.jpg

inst/shiny_app/www/images/marker_banner.jpg

inst/shiny_app/www/images/analyse_banner.jpg

inst/shiny_app/www/images/findings_banner.jpg

inst/shiny_app/www/images/logo.jpg

inst/shiny_app/www/images/map_banner.jpg

man/FPR4AM.Rd man/Eagle-package.Rd man/ReadZmat.Rd man/ReadMap.Rd man/ReadPheno.Rd man/OpenGUI.Rd man/ReadMarker.Rd man/PlotAM.Rd man/SummaryAM.Rd man/AM.Rd

Eagle documentation built on Nov. 30, 2021, 9:08 a.m.