eco.plotCorrelog: eco.plotCorrelog

In EcoGenetics: Management and Exploratory Analysis of Spatial Data in Landscape Genetics

Description

Plot method for correlograms and variograms. For examples, see eco.correlog eco.cormantel eco.variogram

Usage

eco.plotCorrelog(
  x,
  var = NULL,
  xlabel = NULL,
  ylabel = NULL,
  title = NULL,
  legend = TRUE,
  background = c("grey", "white"),
  errorbar = FALSE,
  intervals = TRUE,
  significant.S = TRUE,
  significant.M = FALSE,
  xlim = NULL,
  ylim = NULL,
  nsim = 999,
  interactivePlot = TRUE,
  meanplot = TRUE,
  randtest = c("permutation", "bootstrap", "none"),
  alpha = 0.05,
  quiet = FALSE
)

Arguments

x	Result of correlogram or variogram analysis
var	Individual variable to plot for multiple analyses with eco.correlog To plot multiple variables in a same plot, use only the argument x (see examples)
xlabel	Label for X axis (default: NULL)
ylabel	Label for Y axis (default: NULL)
title	Title of the plot (default: NULL)
legend	Show legends in ggplot graphs? (default: TRUE)
background	Background color ("grey" or "white")
errorbar	Show error-bars? (default: FALSE)
intervals	Show bootstrap CI in kinship analysis? (default: TRUE)
significant.S	With single variables and permutation test: show different colours for significant points? (default: TRUE)
significant.M	With multiple variables: show only significant correlograms? (default: FALSE)
xlim	X axis limits (as vector: c(min, max); default: NULL)
ylim	Y axis limits (as vector: c(min, max); default: NULL)
nsim	Number of simulations for permutation or bootstrap tests.
interactivePlot	Show an interactive plot via plotly? (default: TRUE)
meanplot	Show a line with the mean, when the plot is for multiple variables? (default: TRUE)
randtest	Randomization test (one of: "permutation", "bootstrap", "none")
alpha	significance level for P (or P-adjusted) values (Default alpha = 0.05)
quiet	print quietly? Default FALSE

Author(s)

Leandro Roser [e-mail]

See Also

eco.correlog eco.cormantel eco.variogram

EcoGenetics documentation built on July 8, 2020, 5:46 p.m.