ecogen2gstudio: Conversion from ecogen to gstudio and gstudio to ecogen

In EcoGenetics: Management and Exploratory Analysis of Spatial Data in Landscape Genetics

Description

These functions converts the genetic data of an ecogen object in a gstudio data frame or viceversa.

Usage

ecogen2gstudio(from, type = c("codominant", "dominant"))

gstudio2ecogen(
  from,
  ID = "ID",
  lat = "Latitude",
  lon = "Longitude",
  struct = NULL
)

Arguments

from	Input object of class "ecogen" or "gstudio" (depending the direction of conversion)
type	The type of data: "codominant" (for codominant data); "dominant" for presence - absence data.
ID	name of the column with ID (default "ID")
lat	name of the column with latitude (default "Latitude")
lon	name of the column with longitude (default "Longitude")
struct	vector with name of the columns with structures (default NULL)

Author(s)

Leandro Roser [e-mail]

Examples

## Not run: 

data(eco.test)
togstudio <- ecogen2gstudio(eco, type = "codominant")
togstudio
toeco <- gstudio2ecogen(togstudio, ID = "ID", lat = "Latitude", 
lon = "Longitude", struct = "pop")
toeco
# as ID, Latitude and Longitude are column names in the <togstudio> data frame 
# (that match default parameter values for gstudio2ecogen), 
# the latter is identical to this:
toeco <- gstudio2ecogen(togstudio, struct = "pop")
toeco

## End(Not run)

EcoGenetics documentation built on July 8, 2020, 5:46 p.m.