spagedi2ecogen: Importing a SPAGeDi file, via conversion to ecogen

In EcoGenetics: Management and Exploratory Analysis of Spatial Data in Landscape Genetics

Description

This function converts a SPAGeDi file into a ecogen object

Usage

spagedi2ecogen(
  infile,
  sep = "",
  missCode = NULL,
  type = c("codominant", "dominant"),
  ...
)

Arguments

infile	Path to the SPAGeDi file.
sep	Character separating alleles (codominant data). Default option is no character separating alleles.
missCode	characters to represent missing genotypes in codominant markers. If NULL, is computed as "0" times the numer of characters coding alleles.
type	Marker type: "codominant" or "dominant".
...	additional arguments passed to ecogen

Author(s)

Leandro Roser [e-mail]

Examples

## Not run: 

data(eco.test)
ecogen2spagedi(eco, dir = "", pop = "pop", ndig = 1,int=2, smax=6, outName="infile.spagedi.txt")
spagedi2ecogen("infile.spagedi.txt", sep = "")

## End(Not run)

EcoGenetics documentation built on July 8, 2020, 5:46 p.m.