msa.merge: Carry Out a MSA of a Set of Different Orthologous Proteins

In EnvNJ: Whole Genome Phylogenies Using Sequence Environments

Description

Carries out a MSA of a set of different orthologous proteins in different species.

Usage

msa.merge(data, outfile = 'any')

Arguments

data	input data must be a dataframe where each row corresponds to a protein and each column to a species.
outfile	path to the place where a fasta file is going to be saved. If 'any', no file is saved.

Details

The input data has the same format that the input data used for EnvNJ or SVD-n-Gram methods. Thus, the name of columns must correspond to that of species.

Value

A dataframe containing the MSA (species x position).

See Also

msa.tree

Examples

## Not run: 
data(bovids)
msa.merge(bovids)
## End(Not run)

EnvNJ documentation built on Sept. 27, 2021, 5:07 p.m.