env.matrices: Environment Matrices
In EnvNJ: Whole Genome Phylogenies Using Sequence Environments
Description
Usage
Arguments
Value
References
See Also
Examples
Description
Provides the frequencies of each amino acid within the environment.
Usage
1
env.matrices(env)
Arguments
env
a character string vector containing the environments.
Value
Returns a list of two dataframes. The first, shown the environment in matrix form. The second provides the frequencies of each amino acid within the environments.
References
Aledo et al. Sci Rep. 2015; 5: 16955. (PMID: 26597773)
See Also
env.extract(), otu.vector()
Examples
1
env.matrices(c('ANQRmCTPQ', 'LYPPmQTPC', 'XXGSmSGXX'))
EnvNJ documentation built on Sept. 27, 2021, 5:07 p.m.
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Description Usage Arguments Value References See Also Examples
Description
Provides the frequencies of each amino acid within the environment.
Usage
1 | env.matrices(env)
|
Arguments
env |
a character string vector containing the environments. |
Value
Returns a list of two dataframes. The first, shown the environment in matrix form. The second provides the frequencies of each amino acid within the environments.
References
Aledo et al. Sci Rep. 2015; 5: 16955. (PMID: 26597773)
See Also
env.extract(), otu.vector()
Examples
1 | env.matrices(c('ANQRmCTPQ', 'LYPPmQTPC', 'XXGSmSGXX'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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