env.extract: Sequence Environment Around a Given Position
In EnvNJ: Whole Genome Phylogenies Using Sequence Environments
Description
Usage
Arguments
Value
References
See Also
Examples
Description
Extracts the sequence environment around a given position.
Usage
1
env.extract(seq, c, r)
Arguments
seq
a string protein sequence.
c
center of the environment.
r
radius of the environment.
Value
Returns a a strings with the extracted environment sequence.
References
Aledo et al. Sci Rep. 2015; 5: 16955. (PMID: 26597773)
See Also
env.matrices(), env.sp()
Examples
1
env.extract('ARGGQQQCATSYV', c = 8, r = 2)
EnvNJ documentation built on Sept. 27, 2021, 5:07 p.m.
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Description Usage Arguments Value References See Also Examples
Description
Extracts the sequence environment around a given position.
Usage
1 | env.extract(seq, c, r)
|
Arguments
seq |
a string protein sequence. |
c |
center of the environment. |
r |
radius of the environment. |
Value
Returns a a strings with the extracted environment sequence.
References
Aledo et al. Sci Rep. 2015; 5: 16955. (PMID: 26597773)
See Also
env.matrices(), env.sp()
Examples
1 | env.extract('ARGGQQQCATSYV', c = 8, r = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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