FisHiCal: Iterative FISH-based Calibration of Hi-C Data

FisHiCal integrates Hi-C and FISH data, offering a modular and easy-to-use tool for chromosomal spatial analysis.

AuthorYoli Shavit, Fiona Kathryn Hamey and Pietro Lio'
Date of publication2014-06-24 01:22:21
MaintainerYoli Shavit <ys388@cam.ac.uk>
LicenseGPL
Version1.1

View on CRAN

Files in this package

FisHiCal
FisHiCal/src
FisHiCal/src/Makevars
FisHiCal/src/Makevars.win
FisHiCal/src/RcppExports.cpp
FisHiCal/src/smacof.cpp
FisHiCal/NAMESPACE
FisHiCal/data
FisHiCal/data/conf.RData
FisHiCal/data/match.RData
FisHiCal/data/spatialInc.RData
FisHiCal/data/calibHiC.RData
FisHiCal/data/datalist
FisHiCal/data/hic.RData
FisHiCal/R
FisHiCal/R/FisHiCal.R FisHiCal/R/RcppExports.R
FisHiCal/MD5
FisHiCal/DESCRIPTION
FisHiCal/man
FisHiCal/man/conf.Rd FisHiCal/man/lsmacof.Rd FisHiCal/man/match.Rd FisHiCal/man/hic.Rd FisHiCal/man/FisHiCal-package.Rd FisHiCal/man/searchInc.Rd FisHiCal/man/findMatchingIndices.Rd FisHiCal/man/getInfoLevelForChr.Rd FisHiCal/man/calibHiC.Rd FisHiCal/man/plotInc.Rd FisHiCal/man/prepareData.Rd FisHiCal/man/prepareCalib.Rd FisHiCal/man/updateCalib.Rd FisHiCal/man/spatialInc.Rd FisHiCal/man/summaryInc.Rd FisHiCal/man/calibrate.Rd

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