calibHiC | in-silico 100*100 calibrated Hi-C contact matrix |
calibrate | Hi-C calibration |
conf | A 3D random configuration of 100 points |
findMatchingIndices | Find matching Hi-C bins for FISH probes, using mid-points |
FisHiCal-package | Iterative FISH-based Calibration of Hi-C Data |
getInfoLevelForChr | Compute the information level for a given chromosome after... |
hic | in-silico 100*100 Hi-C contact matrix with with 5% noise |
lsmacof | 3D reconstruction from Hi-C distances |
match | in-silico FISH distances and matching Hi-C frequencies with... |
plotInc | Plot a spatial inconsistency |
prepareCalib | Prepare Hi-C calibration |
prepareData | Match FISH distances and Hi-C frequencies for calibration |
searchInc | Search for spatial inconsistencies |
spatialInc | Spatial inconsistencies detected for loci in fibroblasts... |
summaryInc | Summarize spatial inconsistencies. |
updateCalib | Update a parameter value in the calibration model |
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