Description Usage Format References Examples
in-silico distances were computed from the random configuration conf
. A power law model was then used to generate matching in-silico Hi-C frequencies. Random Noise was further added to long range frequencies to mimic a typical situation for Hi-C data. This data structure is used to illustrate the usage of prepareCalib
and calibrate
.
1 |
A data frame with 4950 observations on the following 2 variables.
distances
a numeric vector giving the in-silico FISH distances
.
frequencies
a numeric vector giving the in-silico Hi-C contact frequencies
.
Y. Shavit, F.K. Hamey, P. Lio', FisHiCal: an R package for iterative FISH-based calibration of Hi-C data, 2014 (submitted).
1 2 |
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