R/clin.data.R

In GRIN2: Genomic Random Interval (GRIN)

#' Example T-ALL Dataset Clinical Data
#'
#' Clinical data file showing demographic and clinical outcomes of 265 newly diagnosed T-cell Acute Lymphoblastic Leukemia (T-ALL) patients that was reported by Liu, Yu, et al. (2017).
#'
#' @format ## `clin.data`
#' A data frame with 265 rows and 11 columns:
#' \describe{
#'   \item{ID}{Patient identifier}
#'   \item{Sex}{Patient gender}
#'   \item{Race}{Patient race}
#'   \item{Age_Days}{Patient age in days}
#'   \item{WBC}{White Blood Cell (WBC) count}
#'   \item{MRD29}{Minimal Residual Disease (MRD) percentage}
#'   \item{MRD.binary}{MRD as a categorical variable (0 if MRD<=0.1 or 1 if MRD>0.1)}
#'   \item{os.time}{Overall survival time in years (time between diagnosis and either the last follow-up or death)}
#'   \item{os.censor}{Survival status (0=alive at the last follow-up or, 1=dead)}
#'   \item{efs.time}{Event-free survival time in years}
#'   \item{efs.censor}{Event indicator (0=censored without event or, 1=event)}
#' }
#' @source Data was extracted from the supplementary material tables of the published Liu, Yu, et al. (2017) manuscript <https://www.nature.com/articles/ng.3909#Sec27> and the publicly available clinical data on TARGET database. The two files were merged and selected list of variables were kept in the final clinical data file.
"clin.data"