GSAQ: Gene Set Analysis with QTL
Version 1.0

Computation of Quantitative Trait Loci hits in the selected gene set. Performing gene set validation with Quantitative Trait Loci information. Performing gene set enrichment analysis with available Quantitative Trait Loci data and computation of statistical significance value from gene set analysis. Obtaining the list of Quantitative Trait Loci hit genes along with their overlapped Quantitative Trait Loci names.

Browse man pages Browse package API and functions Browse package files

AuthorSamarendra Das <samarendra.das@icar.gov.in>
Date of publication2016-09-08 13:07:11
MaintainerSamarendra Das <samarendra.das@icar.gov.in>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GSAQ")

Man pages

genedist: Chromosomal distribution of the genes in the selected geneset
genelist: A list of genes of rice
geneqtl: List of the selected genes along with their corresponding...
GeneSelect: Selection of informative geneset
GSAQ: Gene Set Analysis with Quantitative Trait Loci with gene...
GSVQ: Gene Set Validation with QTL using Hyper-geometric test...
qtldist: QTL wise distribution of genes in the selected geneset
qtlhit: Computation of qtl-hit statistic for the selected gene set
qtl_salt: A list of salt responsive Quantitative Trait Loci of rice
rice_salt: Gene expression data of rice under salinity stress
totqtlhit: Computation of total number of qtl-hits found in the whole...

Functions

GSAQ Man page Source code
GSVQ Man page Source code
GeneSelect Man page Source code
genedist Man page Source code
genelist Man page
geneqtl Man page Source code
qtl_salt Man page
qtldist Man page Source code
qtlhit Man page Source code
rice_salt Man page
totqtlhit Man page Source code

Files

NAMESPACE
data
data/qtl_salt.rda
data/genelist.rda
data/rice_salt.rda
R
R/GSAQ.R
MD5
DESCRIPTION
man
man/qtl_salt.Rd
man/rice_salt.Rd
man/GeneSelect.Rd
man/geneqtl.Rd
man/GSVQ.Rd
man/qtldist.Rd
man/genelist.Rd
man/qtlhit.Rd
man/totqtlhit.Rd
man/genedist.Rd
man/GSAQ.Rd
GSAQ documentation built on May 19, 2017, 10:49 p.m.