totqtlhit: Computation of total number of qtl-hits found in the whole...

In GSAQ: Gene Set Analysis with QTL

Description

It enable to Compute the total number qtl-hits found in the whole gene space or in the micro-array chip

Usage

totqtlhit(genelist, qtl)

Arguments

genelist	genelist is a N by 3 dataframe/ matrix (genes/gene ids as row names); where, N represents the number of genes in the whole gene set: first coloumn represnting the chromosomal location of genes: second coloumn representing the start position of genes in terms of basepairs: third coloumn representing the end position of genes in terms of basepairs.
qtl	qtl is a Q by 3 dataframe/matrix (qtl names/qtl ids as row names);where, Q represents the number of qtls: first coloumn represnting the chromosomal location of qtls: second coloumn representing the start position of qtls in terms of basepairs: third coloumn representing the end position of qtls in terms of basepairs.

Value

The function returns a numeric value representing the total number of qtl-hits found in the whole gene list or in a micro-array chip.

Author(s)

Samarendra Das

Examples

data(genelist)
data(qtl_salt)
genelist=as.data.frame(genelist)
qtl=as.data.frame(qtl_salt)
totqtlhit(genelist, qtl)

GSAQ documentation built on May 2, 2019, 9:34 a.m.