qtl_salt: A list of salt responsive Quantitative Trait Loci of rice

In GSAQ: Gene Set Analysis with QTL

Description

This data is in form of a 13 by 3 dataframe with qtls/qtl ids as rownames. The first column reoresents the chromosomal location of the respective qtls (chromosome number). The second coloumn represents start position of the qtls in terms of basepairs (bps) and the third coloumn represents end position of qtls in terms of basepairs (bps) in their respective chromosomes.

Usage

data("qtl_salt")

Format

A data frame with 13 rows as qtl and the columns represent the chromosomal locations, start positions and end positions of respective qtls.

Chr

chr represents the chromosomal location of the qtls

Start

start represents the start position of the qtls in their respective chromosomes

End

End represents the end position of the qtls in their respective chromosomes

Details

The data is created by taking 13 unique salt responsive qtls from the Gramene QTL database. The genomic locations of these QTLs on rice genome are obtained using Gramene annotation of MSU Rice Genome Annotation (Osa1).

Source

Gramene QTL library (http://www.gramene.org/qtl/). Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Research 35: D883-D887.

Examples

data(qtl_salt)

GSAQ documentation built on May 2, 2019, 9:34 a.m.