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GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) <doi:10.1038/s41467-021-24152-2>.
Getting started
README.md
Converting from GillespieSSA to GillespieSSA2
Decaying-Dimerization Reaction Set
Introduction to GillespieSSA2
Kermack-McKendrick SIR model
Linear Chain System
Lotka Predator-Prey model
Pearl-Verhulst Logistic Growth model
Radioactive Decay model
Rosenzweig-MacArthur Predator-Prey model
SIRS metapopulation model
Browse package contents
Package details |
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| Author | Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>), Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>) |
| Maintainer | Robrecht Cannoodt <rcannood@gmail.com> |
| License | GPL (>= 3) |
| Version | 0.3.0 |
| URL | https://rcannood.github.io/GillespieSSA2/ https://github.com/rcannood/GillespieSSA2 |
| Package repository | View on CRAN |
| Installation |
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