Files in GillespieSSA2

Gillespie's Stochastic Simulation Algorithm for Impatient People

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/ssa_method.R R/compile_reactions.R R/reaction.R R/ssa_exact.R R/ssa_plot.R R/ode_em.R R/ssa_simulation.R R/port_reactions.R R/ssa_btl.R R/ssa_etl.R R/package.R R/zzz.R

src/ode_em.cpp

src/RcppExports.cpp

src/ssa_etl.cpp

src/ssa_method.h

src/test_helper_funs.cpp

src/ssa_exact.cpp

src/ssa_btl.cpp

src/ssa_simulation.cpp

src/utils.cpp

src/utils.h

src/ssa_method.cpp

inst/REFERENCES.bib

inst/CITATION

inst/doc/decaying_dimer.html

inst/doc/an_introduction.R inst/doc/linear_chain.R inst/doc/lotka_predator_prey.R

inst/doc/rm_predator_prey.html

inst/doc/linear_chain.html

inst/doc/epi_chain.html

inst/doc/epi_chain.Rmd inst/doc/converting_from_GillespieSSA.R inst/doc/radioactive_decay.Rmd

inst/doc/logistic_growth.html

inst/doc/converting_from_GillespieSSA.Rmd inst/doc/lotka_predator_prey.Rmd inst/doc/radioactive_decay.R

inst/doc/radioactive_decay.html

inst/doc/sir.Rmd inst/doc/decaying_dimer.Rmd inst/doc/sir.R

inst/doc/lotka_predator_prey.html

inst/doc/logistic_growth.R inst/doc/rm_predator_prey.R inst/doc/linear_chain.Rmd inst/doc/epi_chain.R

inst/doc/an_introduction.html

inst/doc/sir.html

inst/doc/rm_predator_prey.Rmd

inst/doc/converting_from_GillespieSSA.html

inst/doc/an_introduction.Rmd inst/doc/decaying_dimer.R inst/doc/logistic_growth.Rmd

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-ssa_etl.R tests/testthat/test-ode_em.R tests/testthat/test-compile_reactions.R tests/testthat/test-ssa_btl.R tests/testthat/test-ssa_exact.R tests/testthat/test-ssa.R tests/testthat/helper-test_ssa_step.R tests/testthat/helper-test_propensity.R tests/testthat/test-reaction.R vignettes/epi_chain.Rmd vignettes/radioactive_decay.Rmd vignettes/converting_from_GillespieSSA.Rmd vignettes/lotka_predator_prey.Rmd vignettes/sir.Rmd vignettes/decaying_dimer.Rmd vignettes/linear_chain.Rmd vignettes/rm_predator_prey.Rmd vignettes/an_introduction.Rmd vignettes/logistic_growth.Rmd man/GillespieSSA2.Rd man/ssa.Rd man/ode_em.Rd man/ssa_exact.Rd man/ssa_etl.Rd man/port_reactions.Rd man/print_ssa.Rd man/compile_reactions.Rd man/ssa_btl.Rd man/plot_ssa.Rd man/reaction.Rd

man/figures/dependencies.png

GillespieSSA2 documentation built on Jan. 24, 2023, 1:10 a.m.