FDR: FDR
In GoMiner: Automate the Mapping Between a List of Genes and Gene Ontology Categories
FDR R Documentation
FDR
Description
compute the false discovery rate (FDR) of the hypergeometric
p values of genes mapping to gene ontology (GO) categories
Usage
FDR(sampleList, GOGOA3, nrand, ONT)
Arguments
sampleList
character vector of user-supplied genes of interest
GOGOA3
return value of subsetGOGOA()
nrand
integer number of randomizations
ONT
c("molecular_function","cellular_component","biological_process")
Value
returns a list with FDR information
Examples
#load("data/GOGOA3small.RData")
sampleList<-randSubsetGeneList(GOGOA3small$genes[["biological_process"]],10)
fdr<-FDR(sampleList,GOGOA3small,nrand=100,"biological_process")
GoMiner documentation built on April 12, 2025, 1:43 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| FDR | R Documentation |
FDR
Description
compute the false discovery rate (FDR) of the hypergeometric p values of genes mapping to gene ontology (GO) categories
Usage
FDR(sampleList, GOGOA3, nrand, ONT)
Arguments
sampleList |
character vector of user-supplied genes of interest |
GOGOA3 |
return value of subsetGOGOA() |
nrand |
integer number of randomizations |
ONT |
c("molecular_function","cellular_component","biological_process") |
Value
returns a list with FDR information
Examples
#load("data/GOGOA3small.RData")
sampleList<-randSubsetGeneList(GOGOA3small$genes[["biological_process"]],10)
fdr<-FDR(sampleList,GOGOA3small,nrand=100,"biological_process")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.