RCPD: RCPD
In GoMiner: Automate the Mapping Between a List of Genes and Gene Ontology Categories
RCPD R Documentation
RCPD
Description
prepare a cpd of p values from randomized gene sets
Usage
RCPD(GOGOA3, ngenes, nrand, ONT)
Arguments
GOGOA3
return value of subsetGOGOA()
ngenes
integer number of genes to randomize
nrand
integer number of randomizations
ONT
c("molecular_function","cellular_component","biological_process")
Details
the cpd of the randomizations is to be used for estimating
the false discovery rate (FDR) of the real sampled genes
Value
returns a histogram of log10(p)
Examples
#load("data/GOGOA3small.RData")
rcpd<-RCPD(GOGOA3small,ngenes=100,nrand=10,ONT="biological_process")
GoMiner documentation built on April 12, 2025, 1:43 a.m.
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| RCPD | R Documentation |
RCPD
Description
prepare a cpd of p values from randomized gene sets
Usage
RCPD(GOGOA3, ngenes, nrand, ONT)
Arguments
GOGOA3 |
return value of subsetGOGOA() |
ngenes |
integer number of genes to randomize |
nrand |
integer number of randomizations |
ONT |
c("molecular_function","cellular_component","biological_process") |
Details
the cpd of the randomizations is to be used for estimating the false discovery rate (FDR) of the real sampled genes
Value
returns a histogram of log10(p)
Examples
#load("data/GOGOA3small.RData")
rcpd<-RCPD(GOGOA3small,ngenes=100,nrand=10,ONT="biological_process")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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