GOthresh: GOthresh
In GoMiner: Automate the Mapping Between a List of Genes and Gene Ontology Categories
GOthresh R Documentation
GOthresh
Description
retrieve lines of m that meet both enrichThresh and countThresh
Usage
GOthresh(m, sampleFDR, enrichThresh, countThresh, fdrThresh)
Arguments
m
return value of GOenrich3()
sampleFDR
component of return value of RCPD()
enrichThresh
numerical acceptance threshold for enrichment
countThresh
numerical acceptance threshold for gene count
fdrThresh
numerical acceptance threshold for fdr
Value
returns a subset of matrix (m joined with fdr$sampleFDR) with entries meeting all thresholds
Examples
#load("data/x_m.RData")
#load("data/x_fdr.RData")
thresh<-GOthresh(x_m,x_fdr$sampleFDR,enrichThresh=2,countThresh=2,fdrThresh=0.100)
GoMiner documentation built on April 12, 2025, 1:43 a.m.
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| GOthresh | R Documentation |
GOthresh
Description
retrieve lines of m that meet both enrichThresh and countThresh
Usage
GOthresh(m, sampleFDR, enrichThresh, countThresh, fdrThresh)
Arguments
m |
return value of GOenrich3() |
sampleFDR |
component of return value of RCPD() |
enrichThresh |
numerical acceptance threshold for enrichment |
countThresh |
numerical acceptance threshold for gene count |
fdrThresh |
numerical acceptance threshold for fdr |
Value
returns a subset of matrix (m joined with fdr$sampleFDR) with entries meeting all thresholds
Examples
#load("data/x_m.RData")
#load("data/x_fdr.RData")
thresh<-GOthresh(x_m,x_fdr$sampleFDR,enrichThresh=2,countThresh=2,fdrThresh=0.100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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