GOthresh: GOthresh

In GoMiner: Automate the Mapping Between a List of Genes and Gene Ontology Categories

GOthresh

Description

retrieve lines of m that meet both enrichThresh and countThresh

Usage

GOthresh(m, sampleFDR, enrichThresh, countThresh, pvalThresh, fdrThresh)

Arguments

m	return value of GOenrich3()
sampleFDR	component of return value of RCPD()
enrichThresh	numerical acceptance threshold for enrichment
countThresh	numerical acceptance threshold for gene count
pvalThresh	numerical acceptance threshold for pval
fdrThresh	numerical acceptance threshold for fdr

Value

returns a subset of matrix (m joined with fdr$sampleFDR) with entries meeting all thresholds

Examples

thresh<-GOthresh(x_m,x_fdr$sampleFDR,enrichThresh=2,countThresh=2,pvalThresh=0.1,fdrThresh=0.100)

GoMiner documentation built on June 8, 2025, 1:29 p.m.