collapse: group assignment

Description Usage Arguments Author(s)

Description

function for assign group info to samples after collapsing

Usage

1
collapse(case, ctl, lib, names, snp.de = -1)

Arguments

case

case samples: 1st_col=haplotype_1, 2nd_col=haplotype_2

ctl

control samples: 1st_col=haplotype_1, 2nd_col=haplotype_2

lib

the tag-SNPs library *.4d with the only alleles appear in sample

names

corresponding allele names in the same format as appear in sample

snp.de

the column position of a list of SNPs to be deleted, default no delete

Author(s)

Xin Huang



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